Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00370 ATGACAAAAAAGTATGCAGGACGTGCTGTGGGAATAGACCTTGGAACAACATATTCATGTGTTGCTGTGTGGCTTGATGAGCACAATAGAGCTGAGATAATCCACAATGAACAAGGAAACAGAACCACACCTTCATTTGTTGCGTTTACTGATGATGAAAGGTTGATTGGTGATGTTGCTAAGAATCAGACTGCATCCAATGCAGAAAACACAGTCTTTGATGTCAAGAGATTAATTGGCAGGAAGTTTAGTGATTCCGTTGTTAAAAAAGATATGATGTTGTGGCCATTCAAGGTCATTGCCGGTGTCGATGACAAACCTATGATTGTTGTTAAGTACAAAGGTCAGGAGAAGCATCTAGGTGCTGAGGAAATTTCATCTATGATACTCACAAAATTGCGGGAGATTGCGGAGAAATATCTGGACTCTCCAGTAAAGAATGTAGTTGTCACTGTGCCAGCTTATTTCTGTGACGCTCAGAGAAAAGCCACAATAGATGCTGGTACCGTTGCTGGTCTTAATGTTATACGGATCATCAATGAACCAACAGCTGCTGCTCTTGCATATGGACTTGATAAGAGAACTAACTGGGCTGGAGAAAGAAATATTTTTGTTTTTGACCTTGGTGGTGGCACTTTTGATGTGTCGATCTTAACAATCAAAGATAAGGTCTTCCAAGTTAAAGCCACTGGCGGAAACACTCACCTTGGAGGAGAGGACTTTGATAACCGGATGGTGAAGTACTTTGTAGATGAGTTCAACAGGAAGAACAAAATGGATATTACTAGGAACCCTAGGGCATTGAGGAGGTTAAGAACTGCATGCGAAAGGGCAAAAAGGATACTCTCTTTTTCTGTTGTCACCACTGTTGAGGTAGACTCTTTATTTCAAGGAATTGATTTCTTTTCATCAATTACTCGTGCCAAGTTTGAGGAAATCAATATGGACATTTTTGAGGAGTGTATGGAGACCGTCAAGAGTTGTCTTACCGACTCTAAAATGAACAAGAGTACTGTAAATGAGGTTGTTCTTGTTGGTGGATCTTCTAGGATTCCCAAAGTGCAGCAACTATTGAAGGAATTTTTCAACGGAAAGGATTTATGCATGAGCATCCACCCTGATGAGGCTGTTGCTTATGGAGCAGCTGTACAAGCTGCTTTGTTGAGTGAAGGCTTTAAAAATGTTCCAAACTTGGTGCTGCGTGATGTTACACCACTGTCTCTTGGTGTCTCAAGCTACGGAGATATCATGAGTGTGGTAATTCCTAGGAACACTTGCATTCCCATCAAGATGACACAAAGTTTTGGAACAGTTAAAGATAACCAAACTTCCGTCTCGATTGAGGTTTATGAGGGTGAGAGAACTAAAGCCAGTGATAACAATCTGCTCGGTTCTTTTATTCTTTCTAACCTCCCGCCGGCACCTCCCGGCTATATTATCAGTATAAGTTTTGCTATAGACGAAAATGGTATTTTGACTGTTACTGCTATGGACAAATCCACTGGAAATACAAATAAGATTACCATAACCAATTACAAAGAAAGGTTGGCTGCCGAAGAAATTAAAAATTTGATTGAAGAAGCTGAGAACTACGAGATTGAAGATAAGAAATTCATAAAGAAGTCTTATCTAATGAATGCTTTAGATTACTGCGTTTACAAGGTGAGGAATGCTTTAAAGCAAACAGAAAGCTTCCTTTATAAGACATTGACATGA 1716 0.3992 MTKKYAGRAVGIDLGTTYSCVAVWLDEHNRAEIIHNEQGNRTTPSFVAFTDDERLIGDVAKNQTASNAENTVFDVKRLIGRKFSDSVVKKDMMLWPFKVIAGVDDKPMIVVKYKGQEKHLGAEEISSMILTKLREIAEKYLDSPVKNVVVTVPAYFCDAQRKATIDAGTVAGLNVIRIINEPTAAALAYGLDKRTNWAGERNIFVFDLGGGTFDVSILTIKDKVFQVKATGGNTHLGGEDFDNRMVKYFVDEFNRKNKMDITRNPRALRRLRTACERAKRILSFSVVTTVEVDSLFQGIDFFSSITRAKFEEINMDIFEECMETVKSCLTDSKMNKSTVNEVVLVGGSSRIPKVQQLLKEFFNGKDLCMSIHPDEAVAYGAAVQAALLSEGFKNVPNLVLRDVTPLSLGVSSYGDIMSVVIPRNTCIPIKMTQSFGTVKDNQTSVSIEVYEGERTKASDNNLLGSFILSNLPPAPPGYIISISFAIDENGILTVTAMDKSTGNTNKITITNYKERLAAEEIKNLIEEAENYEIEDKKFIKKSYLMNALDYCVYKVRNALKQTESFLYKTLT 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00370 571 FunFam Heat shock 70 kDa protein 391 543 - -
Vifa5g00370 571 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vifa5g00370 571 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Vifa5g00370 571 Coils Coil 514 541 - -
Vifa5g00370 571 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Vifa5g00370 571 Gene3D - 73 128 - -
Vifa5g00370 571 Gene3D Actin; Chain A, domain 4 237 320 - -
Vifa5g00370 571 FunFam Heat shock protein 70 10 202 - -
Vifa5g00370 571 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 394 549 IPR029047 -
Vifa5g00370 571 SUPERFAMILY Actin-like ATPase domain 199 389 IPR043129 -
Vifa5g00370 571 PANTHER HEAT SHOCK PROTEIN 70KDA 9 561 IPR013126 GO:0005524|GO:0140662
Vifa5g00370 571 PRINTS 70kDa heat shock protein signature 8 21 - -
Vifa5g00370 571 PRINTS 70kDa heat shock protein signature 339 355 - -
Vifa5g00370 571 PRINTS 70kDa heat shock protein signature 477 493 - -
Vifa5g00370 571 PRINTS 70kDa heat shock protein signature 60 68 - -
Vifa5g00370 571 PRINTS 70kDa heat shock protein signature 371 391 - -
Vifa5g00370 571 PRINTS 70kDa heat shock protein signature 397 416 - -
Vifa5g00370 571 PRINTS 70kDa heat shock protein signature 38 50 - -
Vifa5g00370 571 PRINTS 70kDa heat shock protein signature 211 221 - -
Vifa5g00370 571 PRINTS 70kDa heat shock protein signature 148 168 - -
Vifa5g00370 571 Gene3D - 194 368 - -
Vifa5g00370 571 Gene3D - 10 386 - -
Vifa5g00370 571 Pfam Hsp70 protein 9 566 IPR013126 GO:0005524|GO:0140662
Vifa5g00370 571 FunFam Heat shock 70 kDa 237 320 - -
Vifa5g00370 571 FunFam heat shock 70 kDa protein-like 73 128 - -
Vifa5g00370 571 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Vifa5g00370 571 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 389 568 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00370 Vifa-Chr5 69283433 69285266 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00370 1 560 Calmodulin-binding Proteins AT3G12580 65.836 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00370 K03283 - gmx:102667572 840.876