Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00369 ATGGCAAAGAAATATGAGGGACCTGCCATTGGAATTGATCTTGGTACAACATATTCATGTGTTGCTGTATGGCAGGAACAAAACAACCGAGCTGAGATAATTCACAATGAACATGGAAACAAAACTACACCTTCTTTTGTTGCTTTTACTGACTCTCAAAGGTTGATTGGTGATGCTGCCAAAAATCAGGCTGCTTCAAATCCAGTCAACACTATCTTTGATGCAAAGAGGTTGATTGGAAGGAAATATAGTGATTCTGTTATTCAAAATGATCTACAGTTATGGCCATTTAAGGTTGTTTCTGGAATTGACGACAACCCTGTGATTGTTGTTAATTTCAAAAATGAAGAAAAGTGCTATGTTGCCGAGGAAATTTCATCGATGATTCTTATGAAGATGAAGGAGATAGCTGATAAGTTTTTGGAGTCAAAGGTTAAAGATGCAGTAATCACTGTGCCGGCTTATTTCAACGACTCTCAGCGAAAAGCCACAAAAGATGCTGGTGCCATTGCCGGACTCAATGTCATTCGGATCATCAATGAGCCTACTGCTGCTGCTCTTGCATATGGCCTTCAGAAGAGAGCTAATTGTGTTGAAGAGAGAAATATTTTCGTCTTCGATCTTGGTGGCGGAACGTTTGATGTGTCTCTTCTTACCATCAAGAATAATGAATTCGATGTTAGGGCTACGGCGGGAGACACTCATCTTGGAGGAGAGGACTTTGATAACAGAATGGTTAACCACTTTGTGAAGGAGTTCAAGAGGAAACATAATAAGGACATAAGTGGGAACTCGAAGGCCCTTAGAAGATTGAGAACCGCTTGCGAGAGAGCGAAAAGGACACTTTCATTTGACAGCGAGACCTCAATAGATATAGATGCTATATTTGAAGGTATTGACTTGTGCTCATCCATCACTCGTGCTAAATTCGAGCAACTCAACATGAATCTCTTTGAAAAGTGTATGGAAACCGTTGAAAGTTGTCTTACTGATGCTAAAATCGATAAGAAAAATGTCGATGATGTTGTTCTTGTTGGTGGTAGTTCTAGGATTCCGAAAGTGATGCAGCTATTGCAAGAATTTTTCAATGGAAAGGAGCTATGTTTGAGCATCAATCCTGATGAGGCGGTTGCTTATGGCGCAGCTGTCCAGGCTGCGTTGCTGAGTAACGGGATCAAGTCTGTTCCAAACTTAGTGCTGCGAGATGTTATACCGTTATCACTTGGGATAATGGTCAAAGGAGATGTCATGAGTGTATTGATTCCGAGAAATTCTACAATTCCTGTAAAGAAGAAACAAGTATACCATACATGTGAAGATGACCAACCCGGTGTCTCTATCGATGTTTACGAGGGTGAGAGAATGGTTGCGAGTGAGAACAACTTGCTTGGTGTATTTGTACTCAAAGTTTGTCTTGCACCTCGCGGCCTTCCTGTAAGTGTATGCTTTGATATCGATGCTGATGGTATACTAAACGTCTCGGCTGAGGAAGAAATCAGTGGCAATAAGAAAGATATTACAATAACGAAAGAAAATGGAAGACTCTCAACTGAAGAAATTAAGAGAATGATAGAGGAAGCCGAGAAGTTCAAGGCAGAAGACATCAAGTTTATGAAGAAAGTTAAAGCGATGAATGTTTTGGAGGATTATCTCTATAACATGAGGAAAGTAATGAAGGATGTTACTTCCATGCTTAGCTTAACTGATGAAATAAAGATCATTGCTGCAATGGTAAAGGGAAAAATGTTGATTGAGGATAAGATGGACCGAGAAACATTTGTTTTTGTGGACTTTCTCAAGGAGCTTGAGAGCATATTTGAATCTGCTTTGAAAAAGATCAACAAAGGTTACTCTGATGATGAAAGTGACTGA 1872 0.399 MAKKYEGPAIGIDLGTTYSCVAVWQEQNNRAEIIHNEHGNKTTPSFVAFTDSQRLIGDAAKNQAASNPVNTIFDAKRLIGRKYSDSVIQNDLQLWPFKVVSGIDDNPVIVVNFKNEEKCYVAEEISSMILMKMKEIADKFLESKVKDAVITVPAYFNDSQRKATKDAGAIAGLNVIRIINEPTAAALAYGLQKRANCVEERNIFVFDLGGGTFDVSLLTIKNNEFDVRATAGDTHLGGEDFDNRMVNHFVKEFKRKHNKDISGNSKALRRLRTACERAKRTLSFDSETSIDIDAIFEGIDLCSSITRAKFEQLNMNLFEKCMETVESCLTDAKIDKKNVDDVVLVGGSSRIPKVMQLLQEFFNGKELCLSINPDEAVAYGAAVQAALLSNGIKSVPNLVLRDVIPLSLGIMVKGDVMSVLIPRNSTIPVKKKQVYHTCEDDQPGVSIDVYEGERMVASENNLLGVFVLKVCLAPRGLPVSVCFDIDADGILNVSAEEEISGNKKDITITKENGRLSTEEIKRMIEEAEKFKAEDIKFMKKVKAMNVLEDYLYNMRKVMKDVTSMLSLTDEIKIIAAMVKGKMLIEDKMDRETFVFVDFLKELESIFESALKKINKGYSDDESD 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00369 623 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vifa5g00369 623 Gene3D Actin; Chain A, domain 4 237 320 - -
Vifa5g00369 623 FunFam Heat shock 70 kDa protein 392 544 - -
Vifa5g00369 623 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Vifa5g00369 623 FunFam Heat shock 70 kDa 237 320 - -
Vifa5g00369 623 Gene3D - 73 128 - -
Vifa5g00369 623 PRINTS 70kDa heat shock protein signature 211 221 - -
Vifa5g00369 623 PRINTS 70kDa heat shock protein signature 60 68 - -
Vifa5g00369 623 PRINTS 70kDa heat shock protein signature 339 355 - -
Vifa5g00369 623 PRINTS 70kDa heat shock protein signature 38 50 - -
Vifa5g00369 623 PRINTS 70kDa heat shock protein signature 397 416 - -
Vifa5g00369 623 PRINTS 70kDa heat shock protein signature 476 492 - -
Vifa5g00369 623 PRINTS 70kDa heat shock protein signature 8 21 - -
Vifa5g00369 623 PRINTS 70kDa heat shock protein signature 148 168 - -
Vifa5g00369 623 PRINTS 70kDa heat shock protein signature 371 391 - -
Vifa5g00369 623 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 389 568 IPR029047 -
Vifa5g00369 623 SUPERFAMILY Actin-like ATPase domain 9 193 IPR043129 -
Vifa5g00369 623 FunFam Heat shock protein 70 10 203 - -
Vifa5g00369 623 Gene3D - 10 386 - -
Vifa5g00369 623 SUPERFAMILY Actin-like ATPase domain 200 388 IPR043129 -
Vifa5g00369 623 FunFam heat shock 70 kDa protein-like 73 128 - -
Vifa5g00369 623 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 394 548 IPR029047 -
Vifa5g00369 623 PANTHER HEAT SHOCK PROTEIN 70KDA 9 570 IPR013126 GO:0005524|GO:0140662
Vifa5g00369 623 Pfam Hsp70 protein 9 579 IPR013126 GO:0005524|GO:0140662
Vifa5g00369 623 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Vifa5g00369 623 Gene3D - 194 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00369 Vifa-Chr5 67941322 67943309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00369 1 620 Calmodulin-binding Proteins AT3G12580 65.280 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00369 K03283 - gmx:102667578 814.298