Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00368 ATGGCCAAAAAATACAAAGGTCCTGCCATTGGAATTGATCTTGGAACAACCTATTCATGTGTAGCAGTTTGGCAAGGACAAAACAATCGTGCAGAGATCATTCACAATGATCAAGGAAACAGAACTACTCCTTCTTTTGTCGCTTTTACTGAATCTCAAAGGTTAATCGGCGATGCTGCAAAAAATCAAGCTGCTTCAAACCCAGCCAATACTATCTTCGATGCAAAGAGGTTAATAGGAAGGAAATATAGTGATCCTGTAATTCAGAATGACATACAGTTGTGGCCATTTAGAGTTGTTGCTGGCAAAGATGACAAACCTGAGATCATTGTTAAGTATAAGGGAGAGGAAAAGTGTTTTTGTGCTGAGGAGATCTCGTCAATGGTCCTAACAAAGATGCGCAGTATTGCTGAGAAATTTTTGGGATCAACTGTTGAGAATGCTGTAGTTACCGTGCCTGCTTATTTCAATGATTCTCAGCGAAAAGCCACAAAGGATGCTGGTGCAATTGCCGGACTCAATGTAATTCGGATAATCAATGAACCTACTGCTGCTGCTCTTGCATATGGCCTTCAGAAGAGAGCTAATTGTGTTGAAGAGAGAAATATTTTCATCTTTGACCTTGGTGGAGGAACTTTTGATGTGTCTCTCCTCACAATTAAGAATAATGTGTTTGATGTCAAAGCCACTGCTGGAGACACTCATCTTGGAGGTGAAGATTTTGATAACAGAATGGTGGACCACTTTGTGATGGAGTTCAAGAGGAAGCATAATAAGGACCTTAGTGGAAACTCGAGGGCTCTTAGGAGGTTGAGAACAGCTTGCGAGAGGGCAAAGAGGACACTTTCATTTGATACCGATGCTGCAATTGACATAGATTCCTTATATGAAGGTATTGATTTCCAGTCATCACTCACTCGGGCCAAGTTTGAGCAACTCAATTTGGATCTCTTTGAAAAGTGTATCAAGACTGTTGAGAGTTGTCTTACTGACTCTAAGATCAACAAGAGTAGTGTGGACGATGTTGTTCTTGTTGGCGGTTCTTCTAGGATTCCCAAAATGCAACAATTGTTGCAAGACTTTTTCATGTGGAAGGACCTTTGTTTGAGCATTAACCCCGATGAGGCTGTTGCTTATGGTGCAGCTGTTCAAGCTTCTTTGCTGTGTGAAGAGTCACATAATTCTCTAAACTTAGTTTTGCTAGATGTCACCCCGTTATCTCTAGGTACGGATGTAAGAGGAGATGCTATGAGTGTGGTGATTCCTAGAAACACATCTGTTCCTGTCAAGATATCAGAAGTATATGTTACAACTGAAGACGACATATCAAATATGTTATTTAGGGTTTATGAGGGTGAGAGATTGAAAGCCAGTGAGAACAATTTATTGGGTTCGTTTAATTTCTCAGTACCTCCTGCTCCTAAAGGCCACATTCCTGTCGAAGTTTGTTTTTCTATAGATGTTGATGGCATTTTAAACGTCTCGGCAAAGGAAGAAACTGGTGGGAATGAGAAAGATATTACAATAACAAGTGACAAGGGAAGGCTAACAGCCCTTGAAATAGAGAGAATGATCCATGAGGCTGAGAATTTCAAGAATGAAGACATGAAGTTTATGAAGAAAGTTGAAGCGGTGAATGGTTTGGATGATTATCTTTACAATATGAGGAAAGTAATGAAGGATGGTAGTGTTAGTTCAATGCTCAACTCAATTGACAAAATGAAGATCAATTCTGCAATGATAAAAGGGAAACTATTGATTGATGGCAAGCAGGACGAAGAAGCGTTTGTGTTTGTGGACTTTCGGAAAGAGCTTGAGAGCATCTTTGAATCAGCTATGGAAAAGATCAACAAAAGTTACTCTGATGAAGAAAGTGACTGA 1881 0.3998 MAKKYKGPAIGIDLGTTYSCVAVWQGQNNRAEIIHNDQGNRTTPSFVAFTESQRLIGDAAKNQAASNPANTIFDAKRLIGRKYSDPVIQNDIQLWPFRVVAGKDDKPEIIVKYKGEEKCFCAEEISSMVLTKMRSIAEKFLGSTVENAVVTVPAYFNDSQRKATKDAGAIAGLNVIRIINEPTAAALAYGLQKRANCVEERNIFIFDLGGGTFDVSLLTIKNNVFDVKATAGDTHLGGEDFDNRMVDHFVMEFKRKHNKDLSGNSRALRRLRTACERAKRTLSFDTDAAIDIDSLYEGIDFQSSLTRAKFEQLNLDLFEKCIKTVESCLTDSKINKSSVDDVVLVGGSSRIPKMQQLLQDFFMWKDLCLSINPDEAVAYGAAVQASLLCEESHNSLNLVLLDVTPLSLGTDVRGDAMSVVIPRNTSVPVKISEVYVTTEDDISNMLFRVYEGERLKASENNLLGSFNFSVPPAPKGHIPVEVCFSIDVDGILNVSAKEETGGNEKDITITSDKGRLTALEIERMIHEAENFKNEDMKFMKKVEAVNGLDDYLYNMRKVMKDGSVSSMLNSIDKMKINSAMIKGKLLIDGKQDEEAFVFVDFRKELESIFESAMEKINKSYSDEESD 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00368 626 Gene3D - 73 128 - -
Vifa5g00368 626 FunFam Heat shock 70 kDa protein 391 545 - -
Vifa5g00368 626 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 397 549 IPR029047 -
Vifa5g00368 626 PRINTS 70kDa heat shock protein signature 211 221 - -
Vifa5g00368 626 PRINTS 70kDa heat shock protein signature 38 50 - -
Vifa5g00368 626 PRINTS 70kDa heat shock protein signature 60 68 - -
Vifa5g00368 626 PRINTS 70kDa heat shock protein signature 397 416 - -
Vifa5g00368 626 PRINTS 70kDa heat shock protein signature 477 493 - -
Vifa5g00368 626 PRINTS 70kDa heat shock protein signature 8 21 - -
Vifa5g00368 626 PRINTS 70kDa heat shock protein signature 339 355 - -
Vifa5g00368 626 PRINTS 70kDa heat shock protein signature 371 391 - -
Vifa5g00368 626 PRINTS 70kDa heat shock protein signature 148 168 - -
Vifa5g00368 626 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vifa5g00368 626 FunFam heat shock 70 kDa protein-like 73 128 - -
Vifa5g00368 626 Gene3D - 194 368 - -
Vifa5g00368 626 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Vifa5g00368 626 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Vifa5g00368 626 Pfam Hsp70 protein 9 615 IPR013126 GO:0005524|GO:0140662
Vifa5g00368 626 Gene3D Actin; Chain A, domain 4 237 320 - -
Vifa5g00368 626 FunFam Heat shock protein 70 10 202 - -
Vifa5g00368 626 FunFam Heat shock 70 kDa 237 320 - -
Vifa5g00368 626 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 544 IPR029047 -
Vifa5g00368 626 SUPERFAMILY Actin-like ATPase domain 200 387 IPR043129 -
Vifa5g00368 626 Gene3D - 10 385 - -
Vifa5g00368 626 Gene3D - 545 626 IPR029048 -
Vifa5g00368 626 PANTHER HEAT SHOCK PROTEIN 70KDA 9 577 IPR013126 GO:0005524|GO:0140662
Vifa5g00368 626 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 618 IPR029048 -
Vifa5g00368 626 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00368 Vifa-Chr5 67934190 67936202 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00368 1 608 Calmodulin-binding Proteins AT3G12580 65.246 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00368 K03283 - zju:107413529 799.66