Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00340 ATGGCCGGAAAAGGAGAAGGTCCAGCGATCGGAATTGATCTCGGCACAACATACTCATGCGTAGGAGTATGGCAGCACGATAGGGTTGAGATCATTGCGAATGATCAAGGAAACCGTACGACGCCGTCTTATGTTGCTTTTACCGATAGTGAAAGGTTGATCGGTGATGCCGCTAAGAATCAGGTCGCCATGAATCCAATCAACACCGTCTTCGATGCTAAACGTTTGATTGGAAGAAGAGTTTCTGATGCTTCTGTTCAGAGTGATTTGAGGCATTGGCCATTCAAGGTTATTGCCGGTGCTGGTGAAAAACCTATGATTGTGGTTAATTACAAGGGTGAGGACAAGCAATTTTCTGCTGAGGAAATTTCCTCTATGGTGCTCATTAAGATGCGTGAGATTGCCGAGGCATATCTTGGTTCTACCGTGAAGAATGCTGTTGTTACTGTTCCTGCTTACTTCAATGATTCACAACGTCAAGCAACAAAGGACGCTGGCGCCATTGCTGGTTTGAATGTTTTGAGAATAATCAATGAGCCAACTGCAGCAGCTATTGCTTATGGTCTAGACAAGAAGGCTACAAGTGTTGGTGAGAAGAATGTGTTGATCTTTGATTTGGGAGGTGGTACTTTTGATGTATCACTTCTCACTATTGAAGAGGGTATTTTTGAAGTTAAGGCCACTGCTGGTGATACCCATCTTGGTGGTGAAGATTTTGATAATAGGATGGTTAATCATTTTGTTCAAGAATTTAAGAGAAAGAATAAGAAGGATATTAGTGGTAACCCTAGGGCACTCAGGAGGTTGAGAACTGCTTGTGAGAGAGCAAAGAGAACTCTCTCATCAACTGCACAAACAACCATTGAGATTGATTCTTTGTATGAGGGTGTTGATTTTTACACCACCATCACTCGTGCTAGGTTTGAGGAACTTAACATGGATTTGTTCAGAAAGTGTATGGAGCCTGTGGAGAAGTGTCTTAGGGATGCTAAGATGGACAAGAGCACTGTTCATGATGTTGTTCTTGTTGGTGGTTCCACCAGGATTCCCAAGGTTCAGCAGCTTCTGCAAGACTTCTTTAATGGTAAGGAGCTTTGCAAGAGTATTAACCCTGATGAGGCTGTTGCTTATGGAGCAGCTGTTCAAGCAGCTATATTGAGTGGTGAAGGTAATGAAAAGGTTCAAGATTTGTTGCTTTTGGATGTCACCCCACTGTCTCTTGGTTTGGAAACTGCTGGCGGTGTCATGACTGTATTGATTCAAAGGAACACCACGATTCCAACCAAGAAGGAGCAAGTTTTCTCCACCTACTCAGACAATCAACCTGGTGTCTTGATCCAAGTATATGAAGGTGAGAGATCAAGAACCAAAGACAACAACTTGTTGGGCAAATTTGAGCTTTCTGGCATTCCTCCAGCCCCCCGTGGTGTTCCTCAGATCACAGTCTGTTTCGACATTGATGCTAATGGTATCTTGAATGTCTCTGCTGAGGACAAAACAACTGGGCAGAAGAACAAGATCACAATTACTAACGACAAAGGTAGACTCTCAAAGGAGGAGATTGAGAAGATGGTTGAGGAAGCAGAGAAGTACAAGGCAGAAGATGAGGAGCACAAGAAGAAGGTCGATGCAAAGAATGCATTGGAAAACTATGCTTACAACATGAGGAACACAATAAAAGACGAGAAGATTGCTTCAAAGCTTCCAGCTGATGACAAGAAAAAGATTGAAGATGCAATTGATGCTTCAATTAATTGGTTGGATAGTAACCAATTGGCAGAGGCAGAGGAGTTTGAGGATAAGATGAAGGAACTTGAGAGTCTTTGCAATCCAATCATTGCTAAGATGTATCAAGGTGGAGCTGCTCCTGACATGGGTGGTGATGATGATGAAGTTCCTCCTGCTGCAGGCGGTGCTGGTCCCAAGATTGAAGAAGTTGATTAA 1944 0.4321 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRVSDASVQSDLRHWPFKVIAGAGEKPMIVVNYKGEDKQFSAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIQRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERSRTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVEEAEKYKAEDEEHKKKVDAKNALENYAYNMRNTIKDEKIASKLPADDKKKIEDAIDASINWLDSNQLAEAEEFEDKMKELESLCNPIIAKMYQGGAAPDMGGDDDEVPPAAGGAGPKIEEVD 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00340 647 Gene3D - 71 126 - -
Vifa5g00340 647 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Vifa5g00340 647 Coils Coil 588 608 - -
Vifa5g00340 647 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Vifa5g00340 647 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 624 IPR029048 -
Vifa5g00340 647 FunFam Heat shock protein 70 10 196 - -
Vifa5g00340 647 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 389 531 IPR029047 -
Vifa5g00340 647 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Vifa5g00340 647 Gene3D Actin; Chain A, domain 4 235 318 - -
Vifa5g00340 647 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Vifa5g00340 647 FunFam heat shock 70 kDa protein-like 71 126 - -
Vifa5g00340 647 FunFam Heat shock 70 kDa protein 539 647 - -
Vifa5g00340 647 Gene3D - 10 384 - -
Vifa5g00340 647 FunFam Heat shock 70 kDa 235 318 - -
Vifa5g00340 647 PANTHER HEAT SHOCK PROTEIN 70KDA 9 581 IPR013126 GO:0005524|GO:0140662
Vifa5g00340 647 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vifa5g00340 647 Coils Coil 514 541 - -
Vifa5g00340 647 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Vifa5g00340 647 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Vifa5g00340 647 Gene3D - 192 366 - -
Vifa5g00340 647 PRINTS 70kDa heat shock protein signature 396 415 - -
Vifa5g00340 647 PRINTS 70kDa heat shock protein signature 477 493 - -
Vifa5g00340 647 PRINTS 70kDa heat shock protein signature 209 219 - -
Vifa5g00340 647 PRINTS 70kDa heat shock protein signature 36 48 - -
Vifa5g00340 647 PRINTS 70kDa heat shock protein signature 146 166 - -
Vifa5g00340 647 PRINTS 70kDa heat shock protein signature 369 389 - -
Vifa5g00340 647 PRINTS 70kDa heat shock protein signature 8 21 - -
Vifa5g00340 647 PRINTS 70kDa heat shock protein signature 58 66 - -
Vifa5g00340 647 PRINTS 70kDa heat shock protein signature 337 353 - -
Vifa5g00340 647 FunFam Heat shock 70 kDa protein 197 260 - -
Vifa5g00340 647 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Vifa5g00340 647 FunFam Heat shock 70 kDa 391 545 - -
Vifa5g00340 647 MobiDBLite consensus disorder prediction 618 647 - -
Vifa5g00340 647 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Vifa5g00340 647 Gene3D - 539 647 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00340 Vifa-Chr5 59123803 59125899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00340 1 647 Calmodulin-binding Proteins AT3G12580 93.088 0.0 1229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00340 K03283 - gmx:100787543 1177.93