Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00332 ATGGACATGTCATTCGACGACATCATTCAGACCCCCACCGCTCGCCGCCGATTCACCGCCGCTAACGGACCAAACCGCAACATCAGCGTTCGTAACGCGATCAGAATCACGCCGTACTCTATTCCTCCATCTCAGGTTGCTAGAGAAGCGTTGCGAAGAAGCAGCGTTGATGTTCCGGAAATGGTTCGCCATCGTGACGCTGTGCAAACTCGACCTATCACTAAACTCTATTTGTCTAACTTGGATGATAGGGTTTCCAACGAAGATATTCATCTGTTGTTCTCGGAAGAGGGTGTGTTGGAAAGGTATTCCATTCATTATGATCAGTTTGGGAGATCAAAAGGAACAGCAGAAGTTGTCTTTACAAGGCAGTCTGATGCTTTATCAGCCCTCAAAAGGTACAACAATACGAGGCTTGATGGAAAGCCACTGCAAATTGAGCTTCAAATTGGAAAAAGCTCTATTACTGCTGCTGATACTCCTCTTGGTCAAAGCAGCATACTGGGAAGAACAAATGATCGCGTCTTTGCAAGGGAAGAAAGGAAGATTGGAGGTATCAGGTTCCATAACAGCTTTGCACATGGCTATCTTCCAATGGGCCATGGAAAAGAGAAGTTCCATATAAGGAAAGTGTCTCTTGGAGCTACTGATCCCAACTTCGAGAGTTATGACCGCCGTCGTGTAGAAACAAAACGCAATTTCCAAAAGTTGTCTGTGAAAGATCTTGATGAAGATCTGGATAAGTATCACTTAGAGGCTAAGAAGATTAACAAAAAAAATGGAAAGGGAAATCAGGACTGA 801 0.4457 MDMSFDDIIQTPTARRRFTAANGPNRNISVRNAIRITPYSIPPSQVAREALRRSSVDVPEMVRHRDAVQTRPITKLYLSNLDDRVSNEDIHLLFSEEGVLERYSIHYDQFGRSKGTAEVVFTRQSDALSALKRYNNTRLDGKPLQIELQIGKSSITAADTPLGQSSILGRTNDRVFAREERKIGGIRFHNSFAHGYLPMGHGKEKFHIRKVSLGATDPNFESYDRRRVETKRNFQKLSVKDLDEDLDKYHLEAKKINKKNGKGNQD 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00332 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 151 IPR000504 GO:0003723
Vifa5g00332 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 144 IPR000504 GO:0003723
Vifa5g00332 266 Gene3D - 54 187 IPR012677 -
Vifa5g00332 266 SUPERFAMILY RNA-binding domain, RBD 68 157 IPR035979 GO:0003676
Vifa5g00332 266 SMART rrm1_1 75 147 IPR000504 GO:0003723
Vifa5g00332 266 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 253 - -
Vifa5g00332 266 Coils Coil 239 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00332 Vifa-Chr5 55556657 55559517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00332 76 148 Eukaryotic Initiation Factors Gene Family AT2G23350 38.356 2.74e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00332 K12881 - gmx:100785926 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00332 5 55556657 55559517 Vifa5g00332 5 55556657 55559517 ECH