Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00323 ATGTCTTTTCAGAACAAAGGCTTCTGGATGCCCCGGGATGCTGGCTGCATAGCTGAAGAAAGTGTTGGATATGAAAATTCTTCAAGAGTCGAACCAAAGAGAAGTCACCAGTGGTTTACAGATACAAGTGAACCAGAAATATTTAGCAACAAGAAACAAGCAGTTGAAGCTAGTAGTGACATGCCGGTTTCAACAACGAATGTTAATGTTTCTCACTGGGACACTAGTTCAGGATTTCACTCGGTGACCGGCCAATTTTCTGACCGTCTCTTTGGATCAGATCTTATACGGTCTGTCAATTCAGTTGATAACAATATGTCGTCAACTGGAAGTGGAAATCTGAACATTGGAGGAAGGAAGAATTTTGTTGGTTATCAATATGGTCATGATCCATCTGTTGGACTGTCAGCATCACCCTCCTCATTAGACCCTTTACCATGTCTGAATTTTGGTGGTATTAGGAAAGTTAAAGTTAATCAAGTCAGAGATTCTGACCATGGCATGCCAGCTGATAACACTACATTTTCAATAGATGGCAATATTACATCGGGCCCATCTTATAGCGATGGAAGTGACAACACCGTTGCTTTAGGGATAAGCAAGCCTGATCACAATCTCCTTGCAATGGGTCACATCTTCAATAAAGGGGATGGGAATTTTATGTTGATGGGTCAAAATTATGGAAAGGGAGATGAAAGTATTTTATCGACGGGTCGGCCCCTTGAAAGAGGCGACGGAAATTTCATAACAATGAATCAGTCATTCGGGAAGGAGGATGGAAATTCGATGTCTCTGGGGACCTCATATTCCAAGGAGCATGAGAGCTTTACATCAATGGGTCTAACCTCTGGTAACTCGGGAGAAAATTTCACAACTGTTGCTCCTTCCTATGATAATGGCACCAATCATTTAACATCAATAGGTCCGGCATATGTTAGTGTGGATTCAAACGTTTCTTCGACTAGTCCATCATTTGTCAGCAACAACTCTAACTTTTTAACTGCAAGTGAAAACCTCGGTAACAGCAGTACCGTGTCTTTTGGAGGTTTTCATGCTGGTGGCCCTGAGCCAAATCCCTCCGGCGGAATCATTAACAGATTTGATCCTTTGACGGGCAACCAAAACTCAGCTCGAGTTGTGGATAGCCTGATTGAATCAAACCCTAATCCACTTGTAAATAACGTTTCAAAATCTAATGCTAAAAGTAATACCGTTGTTAAGAACAAAGAACCAAAGACGGCCAAGAAGGCTTCCAACAACTTCCCTTCAAATGTCAAAAGTTTGCTGTCAACTGGTATTTTTGACGGCATTTCGGTGAACTATTGTACATGGTCAAGGGAGAGAAATCTTCAAGGAATCATAAAAGGAACGGGCTACATGTGTTCATGTGACGACTGCAAGGGACAAAAGGCTCTTAATGCTTATGAGTTTGAGTGTCACGCTGGAGCCAAGTCAAAACACCCTAACAGTCACATATTCTTTGAAAATGGAAAATCCATCTATGCTGTTGTTCAAGAACTGAAAAACACTCCTCAAGAGACGCTTTTTGACGCGATTCAAACCGTGACAGGTTCCACCATCAACCAAAAGAACTTTCGTATTTGGAAAGCATCATATCAAGCTGCTACTCGTGAGCTTCAGCGCATCTATGGAAAGGATGATGCCGTCATACCATCTTAA 1680 0.419 MSFQNKGFWMPRDAGCIAEESVGYENSSRVEPKRSHQWFTDTSEPEIFSNKKQAVEASSDMPVSTTNVNVSHWDTSSGFHSVTGQFSDRLFGSDLIRSVNSVDNNMSSTGSGNLNIGGRKNFVGYQYGHDPSVGLSASPSSLDPLPCLNFGGIRKVKVNQVRDSDHGMPADNTTFSIDGNITSGPSYSDGSDNTVALGISKPDHNLLAMGHIFNKGDGNFMLMGQNYGKGDESILSTGRPLERGDGNFITMNQSFGKEDGNSMSLGTSYSKEHESFTSMGLTSGNSGENFTTVAPSYDNGTNHLTSIGPAYVSVDSNVSSTSPSFVSNNSNFLTASENLGNSSTVSFGGFHAGGPEPNPSGGIINRFDPLTGNQNSARVVDSLIESNPNPLVNNVSKSNAKSNTVVKNKEPKTAKKASNNFPSNVKSLLSTGIFDGISVNYCTWSRERNLQGIIKGTGYMCSCDDCKGQKALNAYEFECHAGAKSKHPNSHIFFENGKSIYAVVQELKNTPQETLFDAIQTVTGSTINQKNFRIWKASYQAATRELQRIYGKDDAVIPS 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00323 559 MobiDBLite consensus disorder prediction 390 421 - -
Vifa5g00323 559 PANTHER AUTOIMMUNE REGULATOR 8 508 - -
Vifa5g00323 559 Pfam Tify domain binding domain 452 507 IPR032308 -
Vifa5g00323 559 MobiDBLite consensus disorder prediction 390 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00323 Vifa-Chr5 52333820 52337807 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00323 390 540 PHD Transcription Factor Family AT3G53680 46.053 6.31e-36 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00323 - - gmx:100782217 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00323 5 52333820 52337807 Vifa5g00323 5 52333820 52337807 ECH
Vifa3g01193 3 308675253 308684543 Vifa5g00323 5 52333820 52337807 ECH