Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00322 ATGAAGAGAGAAAGAGAAGTTGATAGCATAACCATGGCAAATTGTTTGATGTTACTTTCTAGAGGAAGTGAACAATTTGAAGCTACTTATTCATCTACCATCACTTCAAATGATCGTGTGTTTGAATGCAAAACATGTAATAGACAATTTTCTTCATTTCAAGCACTTGGTGGCCATAGAGCAAGTCATAAGAAACCAAGGTTAATGATGGGAGAAAATATTAATGGTCAATTGCTAAATACACCCCCTAAACCTAAATCTCATGAGTGTTCTATTTGTGGATTGGAGTTTGCAATAGGACAAGCTTTAGGTGGTCATATGAGGAGACATAGAGCTTCAAATATGAATAATTCTAATAATACTATGAGTTCTAGTAGTGGTGGTGGGGGTGGGGGTGGGAATAGTAGTTTTGATTCTTCACAAAAGATGAAAGGTAGAAAGAGAGTTTTGCTTTTGGATTTGGATTTGAATTTGACTCCTTTTGAGAATGATTTGGAGTTTTTGAAGATTGGAAAGACAACTGCAAATTTGATTGATTATTTGCATTGA 549 0.3497 MKREREVDSITMANCLMLLSRGSEQFEATYSSTITSNDRVFECKTCNRQFSSFQALGGHRASHKKPRLMMGENINGQLLNTPPKPKSHECSICGLEFAIGQALGGHMRRHRASNMNNSNNTMSSSSGGGGGGGNSSFDSSQKMKGRKRVLLLDLDLNLTPFENDLEFLKIGKTTANLIDYLH 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00322 182 Gene3D Classic Zinc Finger 20 115 - -
Vifa5g00322 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Vifa5g00322 182 Pfam C2H2-type zinc finger 88 112 - -
Vifa5g00322 182 Pfam C2H2-type zinc finger 40 66 - -
Vifa5g00322 182 PANTHER ZINC FINGER PROTEIN ZAT5 5 164 - -
Vifa5g00322 182 MobiDBLite consensus disorder prediction 111 140 - -
Vifa5g00322 182 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Vifa5g00322 182 SUPERFAMILY beta-beta-alpha zinc fingers 39 110 IPR036236 -
Vifa5g00322 182 SMART c2h2final6 88 110 IPR013087 -
Vifa5g00322 182 SMART c2h2final6 41 63 IPR013087 -
Vifa5g00322 182 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Vifa5g00322 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00322 Vifa-Chr5 51387501 51388049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00322 1 179 C2H2 Transcription Factor Family AT2G37430 44.920 5.95e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g00322 zf-C2H2_6 9.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00322 - - gmx:100500371 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00322 5 51387501 51388049 Vifa5g00322 5 51387501 51388049 ECH