Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00321 ATGCCAATCTATAGAATTGCAATTGGATCTCCAGGAGAAGCTGGTCACCCTGACGCAATTAGAGCTGCATTTGCTGAATTCTTCTCTATGCTTATTTTTGTTTTTGCTGGTCAAGGCTCTGGCATGGCTTACAACAAAATTACGAATAATGGACCTGCAACACCTGCTGGTTTAATAGCTGCATCACTGTCTCATGCATTTGGACTATTTGTTGCTGTTTCTGTTGGAGCAAACATCTCTGGTGGACATGTGAACCCTGCAGTCACATTTGGTGCCTTCATTGGTGGAAACATTACACTTTTGAGAAGTATGTTATATTGGATTGCACAGTTACTTGGTTCAGTTGTTGCTTGCATTCTTCTCAAGTCTGCTACTGGTGGAATGGAGACATCAGCATTTGCAATATCCTCAGACATATCAGTATGGAACGCCCTAGTTTTTGAAATTGTGATGACATTTGGATTAGTATACACAGTTTATGCAACAGCAGTAGATCCAAAAAAAGGCAACATAGGAATCATTGCTCCACTTGCAATTGGTATCATTGTTGGTGCAAATATCTTAGCTGGTGGAGCATTTGATGGTGCATCAATGAATCCAGCTGTTTCATTTGGGCCTGCTGTTGTTAGTTGGACTTGGACTCATCATTGGATCTATTGGGTTGGCCCATTTGTTGGTGCAGCAATTGCTGCTATTGTCTATGATAATATCTTCATTGGTGAAGATGGTCATGAATCTCTCACTAGTAGTGATTTCTAA 759 0.4071 MPIYRIAIGSPGEAGHPDAIRAAFAEFFSMLIFVFAGQGSGMAYNKITNNGPATPAGLIAASLSHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRSMLYWIAQLLGSVVACILLKSATGGMETSAFAISSDISVWNALVFEIVMTFGLVYTVYATAVDPKKGNIGIIAPLAIGIIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTHHWIYWVGPFVGAAIAAIVYDNIFIGEDGHESLTSSDF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00321 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vifa5g00321 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g00321 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g00321 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g00321 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g00321 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g00321 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g00321 252 PANTHER AQUAPORIN-8 6 246 IPR034294 -
Vifa5g00321 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g00321 252 FunFam Probable aquaporin TIP1-1 4 251 - -
Vifa5g00321 252 Gene3D Glycerol uptake facilitator protein. 5 252 IPR023271 -
Vifa5g00321 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa5g00321 252 SUPERFAMILY Aquaporin-like 16 240 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00321 Vifa-Chr5 50517697 50519806 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00321 1 252 Major Intrinsic Protein MIP AT4G01470 84.127 8.96e-155 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00321 K09873 - gmx:100788583 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00321 5 50517697 50519806 Vifa5g00321 5 50517697 50519806 ECH