Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00320 ATGATGATTTCGAGAGGATTGTTCGGGTGGTCTCCGCCGCATGTACAACCGCTGACGCCGGTGTCGGAGGTGTCGGAGCCACCGGAGTCTCCGTCGCCGTATTTGGACCCTAGTGCGGAGAATTCTACGTCGCAGCAGGTGGAGGTGGAGGAGGAAATGGAGGAGCAGGAGGAGATGGAGCCGCCGCCTGCTGCCGTGCCTTTCTCGAAGCTGTTTGCGTGTGCGGATAGGTTTGATTGGTTTCTGATGGCGGTTGGTTCGGTTGCTGCGGCCGCGCATGGAACGGCGCTTGTGGTTTATTTGCATTATTTTGCGAAGATTGTTCATGTGTTGAGGATGGATGATCAGCCGGCGGGGTCGCAGGAGAGGTTTGAGAGGTTCACTGAGCTTGCTTTAACCATTGTTTACATTGCAGCGGGAGTTTTTGTGGCTGGCTGGATTGAGGTTTCATGTTGGATTTTGACTGGAGAACGACAAACTGCCGTCATAAGATCCAACTATGTTCAAGTATTATTAAATCAGGATATGAGTTTTTTCGATACTTATGGGAATAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTGCTGCTTATTCAGTCTGCTCTTAGCGAAAAAGTTGGGAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTCATTGGCCTTATCAACTGTTGGCAGATTGCTTTGATAACATTAGCAACGGGTCCCTTTATTGTTGCCGCGGGAGGAATATCAAATATATTTCTCCATAGACTTGCAGAGAATATCCAAGATGCATATGCTGAAGCAGCCAGCATTGCTGAACAGGCAGTTTCCTATGTAAGGACATTGTATGCATTTACAAATGAAACGTTGGCCAAATACTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGCATATTGATAAGTCTTGTTCAAGGGCTAGGTCTTGGATTCACATACGGACTTGCAATATGTTCTTGTGCTTTACAGCTCTGGGTTGGAAGATTCTTAGTTATTCACGGAAAAGCACATGGTGGTGAAATTGTAACAGCACTTTTTGCTGTAATTTTAAGTGGCCTGGGATTGAATCAAGCAGCGACAAATTTCTACTCCTTTGAACAGGGGCGGATAGCTGCTTATAGATTATATGAGATGATAAGTCGGTCATCCTCATCTGTTAATCATGATGGCACTTCTCCAGACTCTGTTCAAGGAAATATAGTGTTTCGGAATGTTTATTTCAGCTATCTGTCTCGTCCCGAAATCCCTATCTTGAGTGGATTTTTTCTCACTGTACCTTCTAAGAAAGCTGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACATTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAATTTGGAGTGGCTGAGGAGCCAAATAGGACTAGTTACCCAGGAGCCTGCTTTGCTCAGTTTGAGTATAAGAGATAACATTGCTTATGGGAGGGATGTCACCATAGATCAAATTGAAGAGGCTGCTAAAATGGCCCATGCACATACATTTATCAGCTCATTGGAGAAAGGTTATGACACACAGGTTGGTAGGGCAGGTCTAGCTTTGACTGAAGAGCAGAAAATAAAACTTTCTATTGCTAGAGCTGTGCTTCTAAATCCATCGATTCTTCTGCTTGATGAAGTCACCGGTGGACTTGATTTTGAGGCTGAGAGGGCTGTTCATGAGGCTCTGGATATGCTTATGTTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTCATAAGAAATGCCGATTATATAGCTGTAATGGAGGAGGGTCAACTCATTGAAATGGGTACCCATGATGAATTGTTGAACCTGAATGGCTTATATGCAGAGCTTCTACGATGTGAAGAGGCAGCAAAACTTCCCAAGCGGATGCCTGCTCGAAACTACAAGGAGACTGCAGCATCTCAAATTGAGAAGGATTCTTCAGCAAGCCATAGCTTCAACGAACCATCATCCCCCAAAATGATGAAGTCACCGTCTCTTCAAAGAATTTCAAATGTATCACATTCGCGACCTTCAGATGTCGTCTATAACTTTCAAGAATCACCTAAAGACCTGAGTCCACCTCCTGAGATGATGCTGGAAAATGGTCAAGCTCTAGATGCAGCTGATAAGGAGCCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGACTGCCAGAGTTACCCAAGATTGATATACAGTCTGTGCATCGACAAAAATCAAATGGGTCTGGCCCAGAATCCCCCATTTCCCCACTTTTAACATCTGATCCTAAAAAAGAACGTTCCCATTCACAAAGTTTTAGTAGACCACATAGTCATTCTGATGATGCCTCAGTTACATTGAGAGAAGAAAGGGAAGCACAGCAGCGGAAACCACCCTCACTTCGGAAGTTGGCCGAACTTAGTTCTGCCGAGTGGCTTTATGCTGTGTTAGGAAGCATTGGTGCTGCCGCCTTTGGTTCTTTCAATCCCCTCCTGGCTTATGTTATTGGCCTTGTGGTGGCAGCTTACTACAGAATTGATAAACATCACCACTTAGAACACGAGATAAACAAGTGGTGCTTGATCATTGGCTGCATGGGTATCGTAACTGTTATTGCCAACTTTTTGCAGCATTTCTACTTCGGTATCATGGGAGAGAAAATGACAGAAAGAGTTAGAAGAATGATGTTCTCAGCCATGCTACGGAATGAAGTAGGATGGTTTGATGATGAGGAAAACAGTGCGGACAATTTATCCATGAGATTGGCCAATGATGCTACTTTTGTACGAGCTGCTTTTAGCAATCGACTTTCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGGCCTTCTCATTGGTGCTGTGCTGCACTGGCGGTTAGCACTGGTGGCTTTTGCAACCCTTCCAATTCTCTGTATTTCTGCAGTTGCCCAGAAATTGTGGCTAGCTGGATTTTCAAGAGGCATACAAGAAATGCACAGAAAAGCTTCGTTGGTTCTTGAAGATGCAGTTAGAAATATATACACTGTTGTTGCATTTTGTGCCGGAAATAAGGTAATGGAGCTCTATAGGCTGCAGTTAAAGAAAATATTTAAGCAGAGCTTTCTTCATGGGATGGGGATTGGTTTTGCATTTGGCTTTTCACAGTTTCTACTTTTTGCTTGTAATGCCCTTCTACTTTGGTACACTGCAATATGTATTAAGAATGGTTACACCAATCCATCCACTGCCCTGAGGGAATACATGGTTTTCTCCTTTGCCACATTTGCCCTTGTGGAACCTTTTGGATTGGCTCCTTACATACTTAAACGACGGAAATCCCTCATATCAGTGTTTGACATTATAGACCGTGAGCCTAAAATTGATCCTGATGATAACAAAGCTTTGAAGCCACCCAATGTATATGGAAGCATCGAGTTAAAAAATATTGATTTTTGTTATCCATCACGTCCTGAAGTATTGGTATTGAGCAATTTTAATCTGAAAATGAATGGAGGCCAAACAGTTGCTGTAGTTGGAGTTTCAGGGTCAGGAAAGAGCACTATAATATCTTTGATGCAAAGATTTTATGATCCAGTTGCGGGCCAAGTTTTACTTGATGGAAGGGATTTAAAGCTCTATAACTTGAGATGGTTGAGGAGCCATCTCGGTCTGATTCAGCAGGAACCGGTTATCTTCTCAACAACCATTAGAGAAAACATTATATATGCAAGACACAATGCAAGTGAAGCTGAGATGAAAGAAGCAGCAAGAATAGCAAATGCTCATCATTTTATTAGCAGTTTGCCTCACGGTTACGACACTCATGTTGGGATGAGAGGTGTTGACTTAACCCCAGGACAGAAACAGAGAATTGCAATAGCAAGAGTAGTACTGAAAAATGCACCTATCTTATTGTTGGATGAAGCAAGTTCATCAATTGAATCCGAGTCAAGCCGAGTGATACAAGAAGCTCTAGACACACTAATAATGGGAAACAAGACCACTATTTTAATAGCGCATAGAGCTGCAATGATGAGGCACGTGGACAATATTGTAGTGCTTAATGGAGGACGGATAGTGGAAGAAGGGAGTCATGATACGTTGGTGGCAAAGAATGGTCTGTATGTCCGATTGATGCAACCTCATTTTGGTAAAGCTATGCGTCAGCATCGGCTTAGTTAG 4218 0.4279 MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDPSAENSTSQQVEVEEEMEEQEEMEPPPAAVPFSKLFACADRFDWFLMAVGSVAAAAHGTALVVYLHYFAKIVHVLRMDDQPAGSQERFERFTELALTIVYIAAGVFVAGWIEVSCWILTGERQTAVIRSNYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYVRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIVTALFAVILSGLGLNQAATNFYSFEQGRIAAYRLYEMISRSSSSVNHDGTSPDSVQGNIVFRNVYFSYLSRPEIPILSGFFLTVPSKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLNLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDVTIDQIEEAAKMAHAHTFISSLEKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVHEALDMLMLGRSTIIIARRLSLIRNADYIAVMEEGQLIEMGTHDELLNLNGLYAELLRCEEAAKLPKRMPARNYKETAASQIEKDSSASHSFNEPSSPKMMKSPSLQRISNVSHSRPSDVVYNFQESPKDLSPPPEMMLENGQALDAADKEPSIRRQDSFEMRLPELPKIDIQSVHRQKSNGSGPESPISPLLTSDPKKERSHSQSFSRPHSHSDDASVTLREEREAQQRKPPSLRKLAELSSAEWLYAVLGSIGAAAFGSFNPLLAYVIGLVVAAYYRIDKHHHLEHEINKWCLIIGCMGIVTVIANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGAVLHWRLALVAFATLPILCISAVAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFKQSFLHGMGIGFAFGFSQFLLFACNALLLWYTAICIKNGYTNPSTALREYMVFSFATFALVEPFGLAPYILKRRKSLISVFDIIDREPKIDPDDNKALKPPNVYGSIELKNIDFCYPSRPEVLVLSNFNLKMNGGQTVAVVGVSGSGKSTIISLMQRFYDPVAGQVLLDGRDLKLYNLRWLRSHLGLIQQEPVIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVIQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDTLVAKNGLYVRLMQPHFGKAMRQHRLS 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00320 1405 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1156 1393 IPR003439 GO:0005524
Vifa5g00320 1405 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 642 IPR003439 GO:0005524
Vifa5g00320 1405 MobiDBLite consensus disorder prediction 779 816 - -
Vifa5g00320 1405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1145 1392 IPR027417 -
Vifa5g00320 1405 PANTHER ABC TRANSPORTER B FAMILY 46 644 IPR039421 -
Vifa5g00320 1405 Pfam ABC transporter 430 572 IPR003439 GO:0005524
Vifa5g00320 1405 SUPERFAMILY ABC transporter transmembrane region 71 382 IPR036640 GO:0005524|GO:0016020
Vifa5g00320 1405 SUPERFAMILY ABC transporter transmembrane region 815 1141 IPR036640 GO:0005524|GO:0016020
Vifa5g00320 1405 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 833 1125 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g00320 1405 CDD ABC_6TM_Pgp_ABCB1_D2_like 824 1139 - -
Vifa5g00320 1405 FunFam ABC transporter B family member 6 773 1001 - -
Vifa5g00320 1405 SMART AAA_5 434 816 IPR003593 GO:0016887
Vifa5g00320 1405 SMART AAA_5 1183 1370 IPR003593 GO:0016887
Vifa5g00320 1405 MobiDBLite consensus disorder prediction 655 701 - -
Vifa5g00320 1405 FunFam ABC transporter B family member 20 70 407 - -
Vifa5g00320 1405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 641 IPR027417 -
Vifa5g00320 1405 Pfam ABC transporter transmembrane region 840 1096 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g00320 1405 Pfam ABC transporter transmembrane region 86 357 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g00320 1405 Gene3D - 397 644 IPR027417 -
Vifa5g00320 1405 Coils Coil 39 59 - -
Vifa5g00320 1405 Pfam ABC transporter 1174 1322 IPR003439 GO:0005524
Vifa5g00320 1405 Coils Coil 253 273 - -
Vifa5g00320 1405 MobiDBLite consensus disorder prediction 747 817 - -
Vifa5g00320 1405 FunFam ABC transporter B family member 20 397 644 - -
Vifa5g00320 1405 FunFam ABC transporter B family member 20 1146 1395 - -
Vifa5g00320 1405 MobiDBLite consensus disorder prediction 757 773 - -
Vifa5g00320 1405 MobiDBLite consensus disorder prediction 13 61 - -
Vifa5g00320 1405 Gene3D - 1154 1394 IPR027417 -
Vifa5g00320 1405 MobiDBLite consensus disorder prediction 663 701 - -
Vifa5g00320 1405 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 382 - -
Vifa5g00320 1405 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 374 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa5g00320 1405 Gene3D ABC transporter type 1, transmembrane domain 70 663 IPR036640 GO:0005524|GO:0016020
Vifa5g00320 1405 Gene3D ABC transporter type 1, transmembrane domain 771 997 IPR036640 GO:0005524|GO:0016020
Vifa5g00320 1405 Gene3D ABC transporter type 1, transmembrane domain 1008 1153 IPR036640 GO:0005524|GO:0016020
Vifa5g00320 1405 FunFam ABC transporter B family member 6 1003 1153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00320 Vifa-Chr5 50506196 50516212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00320 60 698 Calmodulin-binding Proteins AT2G36910 43.425 1.41e-164 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00320 K05658 - gmx:100789116 2446.77