LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g00318	ATGGAAACAACTTTTTGTAATTATTGTGCAGTGGACAAACCGAAAAAAGCTGATCCTAAAGCTCAGGCCTTGAAGACAGCCAAGGCTGTGAAGTCAGGTGGCCAAGTGATTAAGAAGAAAGCAAAGAAGATCAGAACAACTGTCACATTTCACCGGCCAAAGACTCTGTCAAAGGACAGAAACCCAAAGTATCCTCGCATTAGTGCAACACCAAGAAACAAGTTGGACCACTATCAAATACTTAAATTTCCTCTAACTACCGAGTCTGCAATGAAGAAGATTGAAGATAACAATACCCTTGTTTTTATTGTCGACCTCCGTGCTGACAAGAAGAAAATTAAAGATGCTGTGAAGAAAATGTATGACATTCAGGCCAAGAAAGTGAACACTTTGATCAGGCCTGATGGTACGAAGAAAGCCTATGTTCGGTTGACTCCAGATTATGATGCATTGGATGTTGCTAACAAAATCGGTATCATTTAA	483	0.3996	METTFCNYCAVDKPKKADPKAQALKTAKAVKSGGQVIKKKAKKIRTTVTFHRPKTLSKDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII	160

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g00318	160	Gene3D	-	41	160	IPR012677	-
	Vifa5g00318	160	ProSitePatterns	Ribosomal protein L23 signature.	138	153	IPR001014	GO:0019843
	Vifa5g00318	160	FunFam	60S ribosomal protein L23a	40	160	-	-
	Vifa5g00318	160	NCBIfam	50S ribosomal protein L23	84	160	IPR019985	GO:0003735\|GO:0005840\|GO:0006412
	Vifa5g00318	160	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	77	153	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Vifa5g00318	160	Pfam	Ribosomal protein L23, N-terminal domain	20	69	IPR005633	-
	Vifa5g00318	160	Pfam	Ribosomal protein L23	80	142	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Vifa5g00318	160	Hamap	50S ribosomal protein L23 [rplW].	80	160	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Vifa5g00318	160	PANTHER	60S RIBOSOMAL PROTEIN L23A	13	160	IPR013025	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g00318	Vifa-Chr5	50392772	50393352	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g00318	33	160	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	89.844	5.80e-68	201

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g00318	K02893		-	gmx:100777933	274.633