Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00317 ATGGAAGTTCGAGGTCGTTCCGTGGAAGATATTTTCGAGGATTTCAAAAGCCGGAGAGCTGGAATCATCAAAGCTCTTACCGTTGATGTTGAAGATTTCTACAGACAATGTGATCCTGAGAAAGAGAATTTGTGCTTATATGGATTACTTAATGAGAAGTGGGAAGTGAATTTACCTGTTGAGGAAGTTCCTCCAGAGCTTCCTGAGCCTGTGCTGGGTATCAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTATCCTTAGTTGCTGTTCATAGTGATACATGGTTGCTTTCCCTTGCATTCTACTTTGGAGCTAGATTTGCGTTTGACAGAACTGACAGGAAACGTCTATTCAATATGATTAATGAACTACCAACAATATTTGAAATTGTTAATGGCTCAACAAAGAAACCAGTTAAAGAGAAGTCTTCAGTCTCAAACAATAGTGGCAGCAAATCTAAGTCCAGTTCTAAAGTGCGGGCTCCTGAAACTCAGAGCAGACTCCCAAAGGCATTACAACCAAAAGATGAGGAAGAAGGACTGGAAGAGAATGATGATGATGAACATGGAGAAGCCATGTGTGGGGCTTGTGGTGATAACGATGGCACTGATGAGTTCTGGATTTGCTGCGACATTTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACTCCTGCTCGGGCCGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAGTAACAAGAGAGCTCGCTAG 750 0.428 MEVRGRSVEDIFEDFKSRRAGIIKALTVDVEDFYRQCDPEKENLCLYGLLNEKWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLSLAFYFGARFAFDRTDRKRLFNMINELPTIFEIVNGSTKKPVKEKSSVSNNSGSKSKSSSKVRAPETQSRLPKALQPKDEEEGLEENDDDEHGEAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00317 249 MobiDBLite consensus disorder prediction 141 190 - -
Vifa5g00317 249 FunFam PHD finger alfin-like protein 188 244 - -
Vifa5g00317 249 CDD PHD_AL_plant 196 245 IPR044104 -
Vifa5g00317 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Vifa5g00317 249 MobiDBLite consensus disorder prediction 141 165 - -
Vifa5g00317 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Vifa5g00317 249 Pfam PHD-finger 195 244 IPR019787 -
Vifa5g00317 249 SUPERFAMILY FYVE/PHD zinc finger 185 245 IPR011011 -
Vifa5g00317 249 PANTHER CPG BINDING PROTEIN 6 248 IPR045104 GO:0006355|GO:0042393
Vifa5g00317 249 SMART PHD_3 195 243 IPR001965 -
Vifa5g00317 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 244 IPR013083 -
Vifa5g00317 249 Pfam Alfin 7 134 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00317 Vifa-Chr5 50375976 50379342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00317 6 249 Alfin-like Transcription Factor Family AT3G42790 72.131 1.35e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vifa5g00317 Alfin 1.1e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00317 K26274 - gmx:100170696 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01297 4 388754931 388758077 Vifa5g00317 5 50375976 50379342 ECH
Vifa5g00317 5 50375976 50379342 Vifa5g00317 5 50375976 50379342 ECH
Vifa5g00317 5 50375976 50379342 Vifa4g01297 4 388754931 388758077 PCT