Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00314 ATGTCATCTTCAAGCGAAGAAGAAGCAAAACATGCTGTAAAGTGGGCTGTTGATCATCTCTTGGAGAAGAACTCTCCATGCACACTCATTCACGTTAAAACCAAATCCTCAAAATCGAAAAGAATTGCATCAACTTTTTCTTCCTTTTCGAGGTTTTGCGCTCGAAAAGGAATTGTAGCAAAGGAGTTGGTTCTGCAAGACTCTGACGTTTCGAGTGCACTTTACGATTACATCATTGATCACTCGATCGTGGACGTTGTTCTCGGTGCTCCTCGCTGGAATAATGCTCTTATAAGGAAATTTAAAGATCTAGATGTGCCAACAAGCTTAATAAAATCTCTGCCAGTATCTTGCACAGTTCATGTTATATCAAAAGGAAAAGTGCATAGTGTTCAAGCAACAGTTCCTATTCCAACCATGACAATTTCTAGTCCTAAGCCAAGTTATTTATCCAAAGATTTACATAGAACATCGTTCGAGCCTAGGCTCGGGCGGCGCTTAAGTAACGACGGTGGAACATTTGGACAAAACATGGATGCAAGACTAGGATCAAGATGTGTGTCCCAAAGAGATAGTTATCCACCAAGAATGTCAATATTAGATGAAAATCAAGATGTAAGTCAGAATGGCATGGAGAGAGATATAAATAGATTCAAACAAGAGCAAAAGTTAACAAAGAAATGTAGGTCTGCATCGGTTGGTAGAGAAGTCGGTTCTTCGAAACAGAAGGAAATGCAAGAAGAATGGATCAGAAGAAAAGCTAGGCTTATTGAAGAGGCTGCATTGGATTTATCCGAGGCAGAGAAGCAGAAAACAAGTGCAGAAGTGGAGACTCAGAAGCGAAAACAGGAGGAAGTAGGAGAAAATGAAGAGAGGATAGGAACATCAAATGAAAATGTAGACAGCAACTATATGTTTAAAACATACGGTATCGAAGAAATTGAAGTTGGAACAAATTACTTTGATCTTAATGGCAAAATTGGTGAAGGTGGATATGGACCTGTTTTCAAAGGAGTGCTTGATAACACTGATGTTGCAGTTAAGGCCTTAAGACCAGACATAACTCAAGGGGAGAAGCAATTTCATCAAGAGGTCCTTGTTTTAGGCTCTATAAGACATCCCAACATTGTAGTACTTTTAGGTGCATGTCCGGAATTCGGGTGCCTCGTGTACGAGTACCTAGAGAACGGAAGCTTAGAAGATCGGCTTTATCAAAAAGGCAACACGCCGCCAATTCCATGGAGGACTAGATTCAAAATAGCAGCAGAGATTGCAACAGGCCTTCTTTTCCTTCACCAAACAAAACCAGAACCTGTGGTGCATCGCGATCTCAAGCCAGCAAACATTCTCCTAGACAGAAACTACATAAGCAAGATCACCGATGTTGGTCTGGCGAGGCTAGTTCCTCCTTCTATCGCCAACAAAACCACTCAATATCACCAGACAGCTGCAGCTGGAACATTTTGCTATATCGATCCGGAGTATCAACAAACGGGACTATTAGGCGTAAAGTCAGACATATATTCATTAGGAGTGATGTTCTTACAGATCATTACTGGAAAGCCGCCTATCGGCGTGGCTCGTCTCGTTGAGGAGGCCATTGAGAACGATAACCTTGCAGCGGTGTTAGATCCGAATGTGACCGATTGGCCGGTCGAAGAGGCTTTATCATTTGCTAAAATGGCATTGAAGTGTTGTGAGATGAGAAAAAAGGATAGACCAGCTCTTGCTACTGTTATTTTGCCAGAGCTTATTAGACTCAGAGATCTATAA 1773 0.4168 MSSSSEEEAKHAVKWAVDHLLEKNSPCTLIHVKTKSSKSKRIASTFSSFSRFCARKGIVAKELVLQDSDVSSALYDYIIDHSIVDVVLGAPRWNNALIRKFKDLDVPTSLIKSLPVSCTVHVISKGKVHSVQATVPIPTMTISSPKPSYLSKDLHRTSFEPRLGRRLSNDGGTFGQNMDARLGSRCVSQRDSYPPRMSILDENQDVSQNGMERDINRFKQEQKLTKKCRSASVGREVGSSKQKEMQEEWIRRKARLIEEAALDLSEAEKQKTSAEVETQKRKQEEVGENEERIGTSNENVDSNYMFKTYGIEEIEVGTNYFDLNGKIGEGGYGPVFKGVLDNTDVAVKALRPDITQGEKQFHQEVLVLGSIRHPNIVVLLGACPEFGCLVYEYLENGSLEDRLYQKGNTPPIPWRTRFKIAAEIATGLLFLHQTKPEPVVHRDLKPANILLDRNYISKITDVGLARLVPPSIANKTTQYHQTAAAGTFCYIDPEYQQTGLLGVKSDIYSLGVMFLQIITGKPPIGVARLVEEAIENDNLAAVLDPNVTDWPVEEALSFAKMALKCCEMRKKDRPALATVILPELIRLRDL 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00314 590 SMART serkin_6 321 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00314 590 Pfam Protein kinase domain 323 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00314 590 MobiDBLite consensus disorder prediction 266 296 - -
Vifa5g00314 590 FunFam Os07g0541700 protein 394 487 - -
Vifa5g00314 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Vifa5g00314 590 PANTHER OS02G0152300 PROTEIN 6 589 - -
Vifa5g00314 590 Coils Coil 250 284 - -
Vifa5g00314 590 SUPERFAMILY Protein kinase-like (PK-like) 302 580 IPR011009 -
Vifa5g00314 590 MobiDBLite consensus disorder prediction 266 295 - -
Vifa5g00314 590 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 294 393 - -
Vifa5g00314 590 Gene3D Transferase(Phosphotransferase) domain 1 394 589 - -
Vifa5g00314 590 Gene3D Phosphorylase Kinase; domain 1 299 393 - -
Vifa5g00314 590 ProSiteProfiles Protein kinase domain profile. 321 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00314 Vifa-Chr5 50201667 50204202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00314 6 590 Receptor kinase-like Gene Family AT1G17540 43.114 4.17e-179 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa5g00314 Pkinase 3.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00314 - - gmx:100814365 651.358