Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00313 ATGGCGTACCAGACCCCCAACCACGAATCACCTTCCGATTCCAACAACCAAAAACGTCTCTACAATCCCTACAAAGACCTCGAAGTCCCCATTCGTAATCTCTACCAGCTCCCAACCTCCCCCGAGCACCTTTTCATCGAAGAGGCCGCCCGAAAACACCGCTCCTGGGGCGAAACCCTAACCTTCCTCACCGGCTGCGGCTACCTCGGCGGCGCCGTTGCCGGCGCCGGGGTCGGCCTCGTCGAAGGCGTTAAATCGTTCGAGTCAGGGGACACCATGAAGCTCAGAGTCAATCGGATTCTCAACTCGTCAGGTCACACCGGTCGGACGTGGGGAAACCGCCTCGGAGTGATAGGGTTGCTTTACGCAGGCATTGAGAGCGGGATCACGGCTGCGAGAGACACCGACGATGTCTTGAACAGCATAGCGGCGGGGCTTGGTACCGGCGTGTTGTATCGGGCTGCGAGGGGGGTTAGATCAGCTGCTGTGGCAGGGGCTGTTGGTGGAGTTGTGGTTGGAGTTGCTGTCACCGCGAAGCAGGCATTGAAACGCTACATACCAATATGA 567 0.5838 MAYQTPNHESPSDSNNQKRLYNPYKDLEVPIRNLYQLPTSPEHLFIEEAARKHRSWGETLTFLTGCGYLGGAVAGAGVGLVEGVKSFESGDTMKLRVNRILNSSGHTGRTWGNRLGVIGLLYAGIESGITAARDTDDVLNSIAAGLGTGVLYRAARGVRSAAVAGAVGGVVVGVAVTAKQALKRYIPI 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00313 188 PANTHER TIM23 30 177 IPR045238 GO:0022857
Vifa5g00313 188 Pfam Tim17/Tim22/Tim23/Pmp24 family 64 171 - -
Vifa5g00313 188 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00313 Vifa-Chr5 49844779 49845345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00313 7 188 Chloroplast and Mitochondria Gene Families AT1G72750 67.568 1.85e-78 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00313 K17794 - gmx:100813158 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00313 5 49844779 49845345 Vifa4g01309 4 390659121 390659675 PCT