Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00310 ATGGGAAATCAGAAGCAAAAGTGGACACCCGAAGAAGAAGAAGCTTTGCATCAAGGCGTTCAAAAACACGGTACCGGAAAGTGGAAGAACATTCTCAGAGACAAAGAGTTCGCTGAGAAACTCTGTAGCCGTTCCAACATTGATCTCAAGGATAAATGGCGGAATTTGAGTGTTTTTCCTGGTCAAAACTCTAAAGATAAGTCTAGGACTCCCAAGGCGAAATCGTTAGTTATTGCTTCTGCTCCTGCTACTCCGGCTCCTGCTCCGGTTAATGCTGCTCCGCCAAATGTTGCTCCTGCGCCTCTAATTCAGACTCCTACGCGCCACCCTTCTCAAATTGAAGATGCTCCTCCACAGTACAATTCAATGATTTTTGAAGCTTTATCAACAATCAAAGATGCCAATGGGTCTGACTTAAGTGCTATTGTTAGCTTCGTTGAGCAAAAGTACAACCTTCCTCAAAATCAAAATTTCAGAAGGACATTGGGTTCAAAGCTAAGAAGACTTGTTACTCAAGGGAGGCTTGAAAAGGTTCAAAATTGTTACAAGATTAAGGATACCCCAGTGGAGACAAAGCCGGATGTTGACTCAAAACCACCTGCACCAAAAGAAATGAACTCGCCAGCACCAGTGGCATCTAATACTTCGGCATTCGATAATGCAATGAGGGAAGCTTCTGAAATTGTAGCCTACAGAATTTCTGATGCAGAGAATAAGTCATTTTTGGCTGCTGAGGCAGTCAAGGAGACAGAAAGATATGCAAAGTTTGTCGAGGAGAATGATGCAATGTTAAAGTTTGCTGAAGAGCTTTTAGAAAAATGTAAGCTTGGTGAAACTTTTCGCTTCACTTAA 852 0.4237 MGNQKQKWTPEEEEALHQGVQKHGTGKWKNILRDKEFAEKLCSRSNIDLKDKWRNLSVFPGQNSKDKSRTPKAKSLVIASAPATPAPAPVNAAPPNVAPAPLIQTPTRHPSQIEDAPPQYNSMIFEALSTIKDANGSDLSAIVSFVEQKYNLPQNQNFRRTLGSKLRRLVTQGRLEKVQNCYKIKDTPVETKPDVDSKPPAPKEMNSPAPVASNTSAFDNAMREASEIVAYRISDAENKSFLAAEAVKETERYAKFVEENDAMLKFAEELLEKCKLGETFRFT 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00310 283 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa5g00310 283 PANTHER SINGLE MYB HISTONE 4 1 279 IPR044597 GO:0003691
Vifa5g00310 283 SMART h15plus2 106 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa5g00310 283 Gene3D - 114 198 IPR036388 -
Vifa5g00310 283 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Vifa5g00310 283 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Vifa5g00310 283 FunFam Telomere repeat-binding factor 1 2 58 - -
Vifa5g00310 283 SUPERFAMILY "Winged helix" DNA-binding domain 117 194 IPR036390 -
Vifa5g00310 283 MobiDBLite consensus disorder prediction 1 27 - -
Vifa5g00310 283 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Vifa5g00310 283 Gene3D - 8 81 - -
Vifa5g00310 283 SMART sant 4 59 IPR001005 -
Vifa5g00310 283 Pfam linker histone H1 and H5 family 118 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa5g00310 283 MobiDBLite consensus disorder prediction 188 214 - -
Vifa5g00310 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 56 IPR017930 -
Vifa5g00310 283 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00310 Vifa-Chr5 49056911 49060787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00310 1 280 Single Myb Histone (SMH) Gene Family AT1G72740 46.341 3.70e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa5g00310 Linker_histone 1.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00310 K09422 - cpap:110818338 267.7