Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00309 ATGAATGAATTGCTTTCCACTGATGGACAAGAACTCATCACCACTTATGATGAAGTCTTTGAAACTTTTGATCATATGGGATTGCAAGAAAATCTCCTGAGAGGCATATATGCTTATGGTTTTGAGAAGCCTTCTGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACTGCAACCTTTTGTTCTGGAATTTTGCAGCAGCTTGATTATGGTTTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAACTTGCACAGCAGATTGAGAAGGTTATGAGAGCTCTTGGTGATTACCTTGGTGTTAAAGTTCATGCTTGTGTTGGTGGCACTAGCGTTCGTGAGGATCAGCGTATTCTACAAACTGGTGTCCATACTGTTGTTGGCACTCCTGGACGTGTGTTTGACATGCTGCGAAGACAGTCTCTTCGGTCCGACAGCATTAAAATGTTTGTTTTGGATGAGGCTGATGAGATGCTTTCTCGTGGTTTCAAGGACCAGATCTATGATATTTTCCAGCTGCTGCCACCTAAAATTCAGGTTGGGGTGTTCTCTGCTACAATGCCACCAGAGGCCTTGGAGATCACAAGGAAGTTCATGAATAAGCCAGTGAGAATTCTGGTAAAGCGTGATGAATTGACCCTTGAGGGTATTAAGCAGTTTTATGTGAATGTTGACAAGGAAGAATGGAAACTAGAGACATTATGTGACCTTTATGAGACTCTGGCTATCACTCAGAGTGTCATTTTTGTCAACACAAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAGGCAGGGACCATACAGTCTCAGCCACCCATGGAGACATGGACCAAAACACTCGTGATATCATCATGCGTGAATTCCGCTCTGGTTCTTCCAGAGTTCTCATTACCACCGACCTCTTGGCTCGTGGTATTGATGTTCAGCAAGTGTCTTTGGTGATAAACTATGATCTTCCTACCCAACCTGAAAACTATCTCCATCGCATTGGGCGAAGTGGGCGTTTTGGAAGAAAAGGTGTTGCTATAAACTTTGTCACTGTGGATGATGCAAGAATGATGTCTGATATTCAGAAGTTTTACAATGTCACCGTAGAGGAATTGCCTTCAAATGTTGCCGATCTTCTCTGA 1185 0.4422 MNELLSTDGQELITTYDEVFETFDHMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQTGVHTVVGTPGRVFDMLRRQSLRSDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTVDDARMMSDIQKFYNVTVEELPSNVADLL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00309 394 Gene3D - 11 229 IPR027417 -
Vifa5g00309 394 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 21 49 IPR014014 GO:0003724
Vifa5g00309 394 SMART helicmild6 274 355 IPR001650 -
Vifa5g00309 394 FunFam Eukaryotic initiation factor 4A-III 229 394 - -
Vifa5g00309 394 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 222 IPR014001 -
Vifa5g00309 394 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 374 IPR027417 -
Vifa5g00309 394 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 233 394 IPR001650 -
Vifa5g00309 394 Gene3D - 230 394 IPR027417 -
Vifa5g00309 394 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 168 176 IPR000629 -
Vifa5g00309 394 Pfam Helicase conserved C-terminal domain 247 355 IPR001650 -
Vifa5g00309 394 CDD SF2_C_DEAD 234 364 - -
Vifa5g00309 394 CDD DEADc_EIF4A 26 223 - -
Vifa5g00309 394 Pfam DEAD/DEAH box helicase 46 207 IPR011545 GO:0003676|GO:0005524
Vifa5g00309 394 SMART ultradead3 40 237 IPR014001 -
Vifa5g00309 394 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 20 378 - -
Vifa5g00309 394 FunFam Eukaryotic initiation factor 4A-II 9 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00309 Vifa-Chr5 48541697 48543859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00309 1 394 Eukaryotic Initiation Factors Gene Family AT1G72730 89.873 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00309 K03257 - gmx:100809918 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00309 5 48541697 48543859 Vifa4g01329 4 396170783 396172582 PCT