Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa5g00309 | ATGAATGAATTGCTTTCCACTGATGGACAAGAACTCATCACCACTTATGATGAAGTCTTTGAAACTTTTGATCATATGGGATTGCAAGAAAATCTCCTGAGAGGCATATATGCTTATGGTTTTGAGAAGCCTTCTGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACTGCAACCTTTTGTTCTGGAATTTTGCAGCAGCTTGATTATGGTTTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGGGAACTTGCACAGCAGATTGAGAAGGTTATGAGAGCTCTTGGTGATTACCTTGGTGTTAAAGTTCATGCTTGTGTTGGTGGCACTAGCGTTCGTGAGGATCAGCGTATTCTACAAACTGGTGTCCATACTGTTGTTGGCACTCCTGGACGTGTGTTTGACATGCTGCGAAGACAGTCTCTTCGGTCCGACAGCATTAAAATGTTTGTTTTGGATGAGGCTGATGAGATGCTTTCTCGTGGTTTCAAGGACCAGATCTATGATATTTTCCAGCTGCTGCCACCTAAAATTCAGGTTGGGGTGTTCTCTGCTACAATGCCACCAGAGGCCTTGGAGATCACAAGGAAGTTCATGAATAAGCCAGTGAGAATTCTGGTAAAGCGTGATGAATTGACCCTTGAGGGTATTAAGCAGTTTTATGTGAATGTTGACAAGGAAGAATGGAAACTAGAGACATTATGTGACCTTTATGAGACTCTGGCTATCACTCAGAGTGTCATTTTTGTCAACACAAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAGGCAGGGACCATACAGTCTCAGCCACCCATGGAGACATGGACCAAAACACTCGTGATATCATCATGCGTGAATTCCGCTCTGGTTCTTCCAGAGTTCTCATTACCACCGACCTCTTGGCTCGTGGTATTGATGTTCAGCAAGTGTCTTTGGTGATAAACTATGATCTTCCTACCCAACCTGAAAACTATCTCCATCGCATTGGGCGAAGTGGGCGTTTTGGAAGAAAAGGTGTTGCTATAAACTTTGTCACTGTGGATGATGCAAGAATGATGTCTGATATTCAGAAGTTTTACAATGTCACCGTAGAGGAATTGCCTTCAAATGTTGCCGATCTTCTCTGA | 1185 | 0.4422 | MNELLSTDGQELITTYDEVFETFDHMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQTGVHTVVGTPGRVFDMLRRQSLRSDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTVDDARMMSDIQKFYNVTVEELPSNVADLL | 394 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa5g00309 | 394 | Gene3D | - | 11 | 229 | IPR027417 | - | |
Vifa5g00309 | 394 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 21 | 49 | IPR014014 | GO:0003724 | |
Vifa5g00309 | 394 | SMART | helicmild6 | 274 | 355 | IPR001650 | - | |
Vifa5g00309 | 394 | FunFam | Eukaryotic initiation factor 4A-III | 229 | 394 | - | - | |
Vifa5g00309 | 394 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 52 | 222 | IPR014001 | - | |
Vifa5g00309 | 394 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 90 | 374 | IPR027417 | - | |
Vifa5g00309 | 394 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 233 | 394 | IPR001650 | - | |
Vifa5g00309 | 394 | Gene3D | - | 230 | 394 | IPR027417 | - | |
Vifa5g00309 | 394 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 168 | 176 | IPR000629 | - | |
Vifa5g00309 | 394 | Pfam | Helicase conserved C-terminal domain | 247 | 355 | IPR001650 | - | |
Vifa5g00309 | 394 | CDD | SF2_C_DEAD | 234 | 364 | - | - | |
Vifa5g00309 | 394 | CDD | DEADc_EIF4A | 26 | 223 | - | - | |
Vifa5g00309 | 394 | Pfam | DEAD/DEAH box helicase | 46 | 207 | IPR011545 | GO:0003676|GO:0005524 | |
Vifa5g00309 | 394 | SMART | ultradead3 | 40 | 237 | IPR014001 | - | |
Vifa5g00309 | 394 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 20 | 378 | - | - | |
Vifa5g00309 | 394 | FunFam | Eukaryotic initiation factor 4A-II | 9 | 228 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa5g00309 | Vifa-Chr5 | 48541697 | 48543859 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa5g00309 | 1 | 394 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 89.873 | 0.0 | 738 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa5g00309 | K03257 | - | gmx:100809918 | 748.043 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa5g00309 | 5 | 48541697 | 48543859 | Vifa4g01329 | 4 | 396170783 | 396172582 | PCT |