Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00307 ATGGAGCCTCGTATTGGGAACAAATTTCGGCTTGGCCGCAAGATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGGTACAAATATTCAGACAAATGAAGAGGTTGCAATCAAGCTTGAAAATGTCAAAACCAAGCATCCTCAGTTGTTGTATGAATCAAAGTTGTATAAAGTGCTTCAAGGAGGAACTGGTATCCCAAATGTGAGATGGTTTGGCGTTGAAGGAGAGTACAATGTTCTGGTGATGGATTTACTAGGACCTAGTCTCGAGGATTTGTTTAGTTTTTGTAGTCGCAAATTGTCCCTTAAAACTGTACTCATGCTTGCTGATCAGATGATAAATCGAGTTGAATATATTCATTCCAAATCATTTTTACATAGGGACATTAAGCCAGACAACTTCCTGATGGGTTTGGGGAGGCGTGCTAATCAAGTTTATGCCATTGACTTTGGTCTCGCTAAAAAATACAGAGACACCTCTACCCATCAGCATATTCCTTACAGAGAGAATAAGAATTTGACAGGAACTGCTAGATATGCTAGTATGAATACACATCTTGGAATTGAGCAAAGCCGTAGGGACGACTTAGAATCACTTGGATATGTTCTTATGTACTTTTTGAGAGGAAGTCTTCCATGGCAGGGGTTGAAAGCAGGTACTAAGAAACAGAAGTATGAAAAAATCAGCGAGAAAAAAGTTTCTACTTCTATTGAGTCCTTGTGTCGTGGCTACCCCTCCGAATTTGCTTCGTACTTCCATTACTGTCGGTCGTTGCGGTTTGATGATAAACCAGATTATGCATATTTGAAAAGGCTTTTTCGCGACCTTTTCATTCGTGAAGGGTTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAGTATCAGCAATCTCAAATTGCCACTCCTCCTTCACGTGCCGTCGGTTCTGGTGCTGGGCCAAGTTCTGGCATACCACCAGCTGTTGTGAGTGCTGCTGATAGACCAACAGGTGGGGAAGAGGGTAGACATACCGGTTGGTCTTCATCAGATCCTGCTCGTAGAAGAACCTCTGGACCTATTGCAAATGATGTAAACTTATCTAGACAAAAAGCCCCAGTTCCAAGTGACTCAACTGCATCGAAAGATGCTATGTTGTCTAGTTCTAATTTCTTCCGACCAAGTGGATCTACAAGACGAGTAGGTGCTGTTTCCGGCAGTCGTGATGCAGTTGTTGGCAGTGAAATTGAACCCTCTCTTCCTCTTGCAAGGGATGGTAGTCCTGGATCACTCCTTAAAACCTCTAGTGCTCAAAGAAATTCACCTATCACATCATCAGAGCTCAAAGGAACATCTTCTAGCAGAAACGCATCAAACATAAAGAATTTTGAGTCAACTCTCCGAGGTATTGATAGCTTGAATTTCAATGACGAGAAGGTACAGTATTAG 1428 0.4223 MEPRIGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYKVLQGGTGIPNVRWFGVEGEYNVLVMDLLGPSLEDLFSFCSRKLSLKTVLMLADQMINRVEYIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQIATPPSRAVGSGAGPSSGIPPAVVSAADRPTGGEEGRHTGWSSSDPARRRTSGPIANDVNLSRQKAPVPSDSTASKDAMLSSSNFFRPSGSTRRVGAVSGSRDAVVGSEIEPSLPLARDGSPGSLLKTSSAQRNSPITSSELKGTSSSRNASNIKNFESTLRGIDSLNFNDEKVQY 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00307 475 MobiDBLite consensus disorder prediction 303 452 - -
Vifa5g00307 475 CDD STKc_CK1_delta_epsilon 8 282 - -
Vifa5g00307 475 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00307 475 Gene3D Transferase(Phosphotransferase) domain 1 1 309 - -
Vifa5g00307 475 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Vifa5g00307 475 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00307 475 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vifa5g00307 475 PANTHER CASEIN KINASE-RELATED 13 382 - -
Vifa5g00307 475 FunFam Casein kinase I isoform delta-like 1 308 - -
Vifa5g00307 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vifa5g00307 475 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00307 475 MobiDBLite consensus disorder prediction 344 395 - -
Vifa5g00307 475 MobiDBLite consensus disorder prediction 422 452 - -
Vifa5g00307 475 FunFam Putative Casein kinase I 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00307 Vifa-Chr5 48037657 48042411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00307 7 223 EF-hand Containing Proteins AT2G17890 26.667 7.23e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vifa5g00307 Pkinase 2.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00307 K02218 - gmx:100778165 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00307 5 48037657 48042411 Vifa4g01330 4 396188829 396193617 PCT