Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00305 ATGGCACGGGGGAGGAAGATTAGGGCTAGGCTTCGCAGGAGTAATTTTTATACATTTGGTTGTCTTAGGCCGACTACGGCTGAGGAGGTGCCTCATCCACTTCAGGGTCCTGGTTACTCGAGAACCGTGTATTGCAACCAGCCTCAAGTTCATGAAAAGAAGAATCTATTTTACTGCAAGAATAATATATCTACGACCAAATACAATGCTATCATGTTTTTACCTAAGGCACTGTTTGAACAGTTTCGAAGGGTTGCTAACATATACTTCCTTTTGGCTGCTTGTCTCTCGGCGTCTCCAATTTCACCTTTCACTTCGGTGAGTATGATTGCTCCTTTGGCTTTTGTTGTGGGGCTTAGTATGGCGAAGGAAGCATTGGAGGATTCACGCAGGTTCCTTCAAGATGTCAAGGTTAATCGCCGGAAAGCTAGTCTTCATAGAGGTAATGGTGTTTTTGGTCTCAGGTCATGGCAGAAAATTATGGTTGGAGATATAGTAAAAGTAGAAAAGGATCAGTTTTTTCCAGCTGACTTGCTTCTCTTGTCTTCAAGCTATGATGAGGATGGGATATGCTATGTCGAGACCATGAATTTAGACGGAGAGACCAACTTGAAGGTGAAAAGATCTTTGGAGGCTACCTTGTCCCTTGATAACGATGGAGCTTTTAAGGATTTCTCCGGAACAATTCGTTGTGAAGACCCGAATCCCAATCTGTACACTTTTGTTGGGAATTTTGAATATGAACGTCAGGTTTATCCTCTTGATCCTGGTCATATTCTCCTCCGAGATTCAAAGCTTAGGAACACTGATTATGTCTATGGGGTGGTCATTTTCACTGGCCACGACAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAAAGAAGCACAATAGAGAAAAAGATGGATTATATCATATACACTCTTTTCACTGTCCTTATATTGATATCCTTTATTAGTTCAATAGGATTTGTTGCTAAGACGAAGTACCAGACCACAGAGTGGTGGTATCTACGGCCTGATAATATTGAATATCAGTATGATCCTGCGAAAATTGGATTGGCTGGGATGAGCCATCTGATCACTGCACTTATTCTCTATGGATATTTGATACCCATCTCTCTTTATGTTTCAATTGAGATTGTGAAGGTATTACAGGCCACCTTCATTAACCAAGACCTTCAAATGTATGATGAAGAAACTGGGACTCCTGCTGAAGCACGGACGTCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACCATCCTTTCTGATAAAACTGGCACTTTAACCTGCAATCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTTCCTATGGTGTACGTTCCAGTGAAGTTGAACTAGCTGCAGCGAAGCAGATGGCTTCTGATCTTGAGGAGGAAGACATGGATCTCTCTAATTTCCCCATGCATAACAAGGGTAAAGTGCCGCGGGAAAATGTTAGAAGAGCTGAAGAAATTGAACTTGAGCCAGTTGTTACTTCTAAGGGTGGCGAGGATCAAAGGCCTACCATAAAGGGATTTGGTTTTGTTGACAGCCGCCTCATGAATGGAAATTGGTTGGAAGATCCCAATGCTCATGTCATTTCGTTGTTTTTCCGGATACTGGCAGTTTGCCATACTGCCATTCCTGAGTTTAACGAGGAGAGTGACAGTTGGACTTATGAAGCTGAGTCACCTGATGAAGGGGCTTTTCTTATAGCTGCTAGAGAGTTTGGTTTTGAATTTTATAGAAGAACCCAATCGAGTGTTGCCGTACGCGAAATAATTTCTGCTTCAGGACACGTGGTTGAAAGAGAGTATAAAATATTGAATCTGCTGGATTTTAGTAGCAAAAGAAAGCGTATGTCAGTGATTGTACGTGATGAGGAGGGATGCATTACTCTTTTATGCAAAGGAGCTGACAGTATCATATTTGATCGATTATCTAAGAATGGAAAGAAGTATTTGGAGGCTACTTCTAGACATTTGACTGAATATGGAGAAGTGGGTTTGAGAACACTAGCCCTGGCTTACAGAAATCTTGATGAACAAGAATATTCTGATTGGAACAACGAGTTTCAGAAAGCCAAGACAACTGTTGGGCCTGACAGAGAGGCAATGCTTGAGAGGCTATCAGATAGTGTTGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCCGTGGAAGACAAGCTGCAGAAAGGGGTGCCGCAATGCATTGATAAACTTGCTCAAGCTGGGCTAAAGATCTGGGTCTTGACTGGGGATAAGATGGAAACTGCAATCAATATTGGGTATTCATGTAGTTTGCTTCGACAGGGTATGAAGCAAATATGTATCTCTACTGCAAATTCAGATTCAGTAATCAATGATGGGAAAGAGGTAATCAAAGGCAACATCCTGACTCAAATCACCAATGCCTCACAATTGATGAAGCTGGAGAAGGACCCACATGCTGCGCATGCATTAATTATTGACGGAAAAACTCTAACATATGCTTTAGAAGATGATATCAAACACCAGTTTTTGGCATTAGCTGTTGATTGTGCGTCTGTTATTTGCTGTCGTGTATCTCCCAAGCAAAAGGCCTTGGTAACAAGGTTAGTGAAAGAAGGAACTGGGAAGACCACTTTAGCAATAGGTGATGGTGCAAATGATGTCGGCATGATTCAAGAAGCTGACATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTGATGGCTAGTGACTTTTCTATTGCTCAATTTCGGTTTTTGGAGCGGCTTCTGGTAGTCCATGGACACTGGTGTTACAAGAGAATTGCACAAATGATATGTTACTTCTTCTACAAAAATATAGCATTTGGCCTCACCATATTCTATTTTGAGGCCTTTGCGGGCTTCTCTGGTCAATCGGTTTATGATGATTGGTACATGATATTGTTTAATGTAGTCCTTACATCGTTGCCCGTAATTTCACTTGGAGTTTTTGAACAAGATGTTCCATCAGAAGTTTGCTTACAGTTTCCTGCATTATATCAGCAAGGACCCAAAAATTTGTTCTTTGACTGGTATAGAATACTTGGATGGATGGGGAATGGTCTATACTCCTCGCTCGTCATCTTCTTCCTTGTTATCTTCATCTTCTATGACCAAGCATTCCGCCTGAATGGCCAGACTGCAGACATGGCTACTGTTGGTACCGTAATGTTCACCAGCATCATCTGGGCTGTCAACTGCCAGATTGCCTTGACAATGAGCCATTTTACATGGATACAACACCTCTTTGTGTGGGGAAGCATTGCCAGTTGGTACCTCTTTCTCTTTTTATATGGCCTGCTTCCTCCACGACATTCCCACTCTGCGTACCAAATATTGGTTGAAGTGCTTGCTCCTGCTCCTATTTATTGGACAGCAACCATTTTAGTAACAGTTGCGTGCAATCTTCCTTATCTTGCCCACATATCATTTCAAAGGTGTTTTAATCCCATGGATCATCACATTATCCAAGAAATCAAGTACTATAAGAAGGACATTGAAGATCAACACATGTGGACGAGGGAGCGGTCTAAAGCAAGACAAGAAACAAAGATTGGATTCTCTGCAAGAGTGGAAGCAAAGATCAGGCAGCTGAGAGGGAGGCTGCAGAAGAAGCAATATTCAACGGGGGCGTCGCCATCATGA 3675 0.4226 MARGRKIRARLRRSNFYTFGCLRPTTAEEVPHPLQGPGYSRTVYCNQPQVHEKKNLFYCKNNISTTKYNAIMFLPKALFEQFRRVANIYFLLAACLSASPISPFTSVSMIAPLAFVVGLSMAKEALEDSRRFLQDVKVNRRKASLHRGNGVFGLRSWQKIMVGDIVKVEKDQFFPADLLLLSSSYDEDGICYVETMNLDGETNLKVKRSLEATLSLDNDGAFKDFSGTIRCEDPNPNLYTFVGNFEYERQVYPLDPGHILLRDSKLRNTDYVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISFISSIGFVAKTKYQTTEWWYLRPDNIEYQYDPAKIGLAGMSHLITALILYGYLIPISLYVSIEIVKVLQATFINQDLQMYDEETGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTSYGVRSSEVELAAAKQMASDLEEEDMDLSNFPMHNKGKVPRENVRRAEEIELEPVVTSKGGEDQRPTIKGFGFVDSRLMNGNWLEDPNAHVISLFFRILAVCHTAIPEFNEESDSWTYEAESPDEGAFLIAAREFGFEFYRRTQSSVAVREIISASGHVVEREYKILNLLDFSSKRKRMSVIVRDEEGCITLLCKGADSIIFDRLSKNGKKYLEATSRHLTEYGEVGLRTLALAYRNLDEQEYSDWNNEFQKAKTTVGPDREAMLERLSDSVERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGYSCSLLRQGMKQICISTANSDSVINDGKEVIKGNILTQITNASQLMKLEKDPHAAHALIIDGKTLTYALEDDIKHQFLALAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLVIFFLVIFIFYDQAFRLNGQTADMATVGTVMFTSIIWAVNCQIALTMSHFTWIQHLFVWGSIASWYLFLFLYGLLPPRHSHSAYQILVEVLAPAPIYWTATILVTVACNLPYLAHISFQRCFNPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFSARVEAKIRQLRGRLQKKQYSTGASPS 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00305 1224 NCBIfam HAD-IC family P-type ATPase 358 473 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa5g00305 1224 NCBIfam HAD-IC family P-type ATPase 852 963 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa5g00305 1224 SUPERFAMILY Calcium ATPase, transmembrane domain M 55 1154 IPR023298 -
Vifa5g00305 1224 FunFam Phospholipid-transporting ATPase 592 723 - -
Vifa5g00305 1224 SFLD C1.7: P-type atpase like 406 933 - -
Vifa5g00305 1224 Coils Coil 450 470 - -
Vifa5g00305 1224 Gene3D - 724 922 IPR023214 -
Vifa5g00305 1224 CDD P-type_ATPase_APLT_Dnf-like 61 1042 - -
Vifa5g00305 1224 FunFam Phospholipid-transporting ATPase 119 290 - -
Vifa5g00305 1224 NCBIfam phospholipid-translocating P-type ATPase 58 1168 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vifa5g00305 1224 SFLD p-type atpase 406 933 IPR044492 -
Vifa5g00305 1224 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Vifa5g00305 1224 PRINTS P-type cation-transporting ATPase superfamily signature 882 901 - -
Vifa5g00305 1224 SUPERFAMILY HAD-like 412 926 IPR036412 -
Vifa5g00305 1224 Pfam Cation transport ATPase (P-type) 547 652 - -
Vifa5g00305 1224 SUPERFAMILY Calcium ATPase, transduction domain A 147 288 IPR008250 -
Vifa5g00305 1224 Gene3D - 591 723 IPR023299 GO:0000166
Vifa5g00305 1224 Gene3D - 436 501 IPR023299 GO:0000166
Vifa5g00305 1224 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 524 688 IPR023299 GO:0000166
Vifa5g00305 1224 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Vifa5g00305 1224 Pfam Phospholipid-translocating P-type ATPase C-terminal 910 1160 IPR032630 -
Vifa5g00305 1224 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 35 1179 - -
Vifa5g00305 1224 Gene3D - 421 435 IPR023214 -
Vifa5g00305 1224 Pfam Phospholipid-translocating ATPase N-terminal 43 110 IPR032631 -
Vifa5g00305 1224 FunFam Phospholipid-transporting ATPase 725 922 - -
Vifa5g00305 1224 Gene3D - 110 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00305 Vifa-Chr5 47354237 47360109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00305 1 1216 Primary Pumps ATPases AT1G17500 75.103 0.0 1894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00305 K01530 - gmx:100778710 2130.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00305 5 47354237 47360109 Vifa4g01332 4 396694944 396700532 PCT