Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00304 ATGGAGCATCACACTGAGATAATCAAGAGTGGGTGCCATAAGATTCTGGAAGGAATCAATTCAATGTCTTTGGTAAATTTAGATGACCAGCAAGTTCATTCCTTAGTGATGATGAGAGAAATTGCGCGCGGGGTTGTTGATGATCGAGATAGAAAGGTGACTAAGAATGACGTGATTACTACGTTGCGCTACAGCATTGAGAAAATGGTGTGTGCATCGAGAGATATCGTTCATATGTTAAGTAGGATGTCCTATGAAGGCTTGGATGACCAGAGGATGCATTTAGTTTTGAGGATGAAGGAAATTGCTCATGGGATTGTTGATAAGCAACCTAGAGTTGCAATAACTACGTCTGAGATACTTGTGGACCAAGTTTGCTTTGTGGATGAAGGGGCGAGAGACAGTCCTGTGGTTGACTCGATCAAGATCAGCAATGGGGATATTCTTATTGATGAGGCACAAAGCACGATGCACGAAGATGAGATGTTGGACGTGGATCAGGTTTTAGGATTTGAAAATGGGATAGATGAAGTAGAAGAGTCTCTGCTGTCATCCTGCTTTCAGCAATTTCTTTTGTGGCCTTCCGATGATTGTGTCACCTTTGAGTGGGTTCAGGACATGATGTTCATCCTTGAGAAGGCTTCACAGAAGACATTGCCAACTGAGTTCTGTCATGTTGTGCAGACCTTTGTGGTGTTCAAATTGATAGATGCTGCCTGTAATGTTTTACGTAAAGAACCAAACTGTGTGGAGATTAATTGTCTTGGAGAGGATTCAAGAGTCATTGTTGTAGGCGATATACACGGGCAGTTTCATGATTTAATGTTTCTTTTGAAGCATTTAGGAATGCCTTCTGAGAACCAGTTTTATGTTTTCAATGGTAATTATGTTGATGAAGGAGCTTGGGGCATTGAGGTGTTCTTGGTCTTGCTAGCTTGGAAGGTCTTGATGCCTCAGAGAGTGTATCTACTCCGTGGAAATCATGAATCAAGATATTGCACTGAACAATATGGTTTTAAGAAGGAGGTACAGACCAAATATGGCAATGAAAGTGAAGATGTGTACAATAAATTCCTAGAGTGTTTCAAGGAACTTCCATTAGCATCAGTTATTGCCAACCGTGTTTATACTACTCATGGGGGGCTTTTTCGTAGCATTCACGCTGCTGCTTCCGCTTCAGTAAATCCAAAACAGAAAATGACACAAAGGGTGGACCTTGGTTCTTTAGCTGATTTATCTCAAGTTAAAAGAACTTGCATAGATTCTCCACTTGAGGGTCCTAACATATTATTGAGTGACATTCTCTGGTCAAAACCATTTAATAGAGATGGTCTGAGGGTTAATGCAGGTCGGAAATTAGGTTTATGGTGCGGTCCTGATTGCACCGAGGCTTTCTTAAAGCAGCACAATTTGAAGCTGATCATCAGATCACATGAAGGACCTGATGCAAGGGCTGGTAGGGATGATTTTGGGGATATGTTGAATGGATACAGCATAGATCATGATGGCGAGTCAGGAAAGCTATATACACTTTTTAGTGCTCCAGACTACCCGCAGTTTGGGGAAAAAAGATATAACAATGAAGGAGCATATGCAATATTGAAGTGGCCTGATTTTGCAACTCCTTCCTTTCAGTCATTCAAATCAGCAGAAAGACCAATGGTGTATCCTTATCTTGATTTTGATGCTGATGACACGGACTTGAGTAAACTACACTCTTCTCAAACCGACATAGAGGCCTCAACCTCCACCTTTTCTAGTCCTCAAGATGCATCGAGACCCGAATTTGACTTTGAGTCATTAGGCATATATAATGCTCCAAGTTGGAGTGTCCAGCTTCCGGATGGTTCAGGCGGTTCCCAAGTTGTGCAGGTTCCAAGAGCTCCTTTGGTGGAAGGGCTGCCTCTCCCACCTAACATAGAGGAGCCTCACGCTGCTGCTTATAAGTATTTGTTCGAGCTTGTTGCTGGCCTGAAACACATGATTGCAACAAGGGAGACGGAGAACAATGCTCGTGTATCGGCTTTGCGAAGTAAAGCTAGGAAACGTAAGGAAAGAGGTCACAATTGA 2070 0.4251 MEHHTEIIKSGCHKILEGINSMSLVNLDDQQVHSLVMMREIARGVVDDRDRKVTKNDVITTLRYSIEKMVCASRDIVHMLSRMSYEGLDDQRMHLVLRMKEIAHGIVDKQPRVAITTSEILVDQVCFVDEGARDSPVVDSIKISNGDILIDEAQSTMHEDEMLDVDQVLGFENGIDEVEESLLSSCFQQFLLWPSDDCVTFEWVQDMMFILEKASQKTLPTEFCHVVQTFVVFKLIDAACNVLRKEPNCVEINCLGEDSRVIVVGDIHGQFHDLMFLLKHLGMPSENQFYVFNGNYVDEGAWGIEVFLVLLAWKVLMPQRVYLLRGNHESRYCTEQYGFKKEVQTKYGNESEDVYNKFLECFKELPLASVIANRVYTTHGGLFRSIHAAASASVNPKQKMTQRVDLGSLADLSQVKRTCIDSPLEGPNILLSDILWSKPFNRDGLRVNAGRKLGLWCGPDCTEAFLKQHNLKLIIRSHEGPDARAGRDDFGDMLNGYSIDHDGESGKLYTLFSAPDYPQFGEKRYNNEGAYAILKWPDFATPSFQSFKSAERPMVYPYLDFDADDTDLSKLHSSQTDIEASTSTFSSPQDASRPEFDFESLGIYNAPSWSVQLPDGSGGSQVVQVPRAPLVEGLPLPPNIEEPHAAAYKYLFELVAGLKHMIATRETENNARVSALRSKARKRKERGHN 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00304 689 PRINTS Serine/threonine phosphatase family signature 290 317 IPR006186 GO:0016787
Vifa5g00304 689 PRINTS Serine/threonine phosphatase family signature 360 386 IPR006186 GO:0016787
Vifa5g00304 689 PRINTS Serine/threonine phosphatase family signature 260 287 IPR006186 GO:0016787
Vifa5g00304 689 PRINTS Serine/threonine phosphatase family signature 323 347 IPR006186 GO:0016787
Vifa5g00304 689 PRINTS Serine/threonine phosphatase family signature 507 523 IPR006186 GO:0016787
Vifa5g00304 689 Pfam Calcineurin-like phosphoesterase 260 481 IPR004843 GO:0016787
Vifa5g00304 689 SUPERFAMILY Metallo-dependent phosphatases 224 558 IPR029052 -
Vifa5g00304 689 Gene3D - 211 606 IPR029052 -
Vifa5g00304 689 SMART pp2a_7 227 551 IPR006186 GO:0016787
Vifa5g00304 689 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 34 672 - -
Vifa5g00304 689 ProSitePatterns Serine/threonine specific protein phosphatases signature. 324 329 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00304 Vifa-Chr5 46791678 46796553 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00304 191 473 Calmodulin-binding Proteins AT5G63870 50.000 4.17e-94 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00304 K04460 - gmx:100779241 865.914