Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00298 ATGGGTGCTTCAGGAAAATGGTTCAAGTCATTTCTTTCTCATAAAAAAATCTCATCTTCAACCATAACAACCGATCAAGAGAAGAAGATTAATGGTGATAACAAGAGTGGTACTAGTAAGAAGAAATGGAAGCTATGGAAGTCATCTTCAGAAGGATCTTCTTCAAGCATGATGAAGAAGGGTGGTTGTAGCACTTCGCTTACTGCTGCTGCGGTTGCTGTGGTGGTTCGAGCTCAACCTAAGGATTTTAACCTCATCAGGCAGGAATGGGCGGCTATTCGAATTCAGGCTCTTTTTCGAGCTTTCTTGGCTAGAAGAGCTTTGAGGGCATTGAGGGCAGTGGTGAGGCTGCAAGCTATATTTAGAGGCAGGCAAGTGCGAAAACAAGCCGCGGTTACTCTAAGGTGCATGCAGGCTCTTGTTAGAGTTCAAGCTCGTGTAAGGGCTAGGAATGTGAGGAAATCTCCAGAAGGCAAAGCAGTTCAGCAGTTGTTAGACGACCATCGCAACCAAGCCGATTCTGTTAGATTTGTAGAGCAAGGATGGTGTGAAATTCCTGGTACTGCAGATGAAGTTAAAGCAAAGCTAAGGCTGAGGCAAGAAGGAGCTATCAAGAGGGATAGAGCAATGGCGTACTCTCTATCGGCGCAGTCAAGAATGAGTGCTAGTCCAAACTCAAAATCAATGACTCCTCTGAAGCATCATCACAACCGTGACAACAAGAGCCTAGGAAACGGTTTATTAGAACGCTGGATGGCAAACAAGCCATGGGAGAGTCCAATGTCAATCAGGAAGAGTGAAGAAATTGTTCCTACTTTTCAAACAAGAAGAAATGGTATGACAACTAGGATTTCAGCTCTCAAAATCTGTCAGCAAACTCCATCATCTTCCACCATAAGCTCCGAATACATGAATGACGATAGCGTTGTATCATCTTCATGTACATCTGGATCTCCATCTATTATGCCATTCAGCAATAATACTGTTAAAGTGGAAGTAACAGAAGAAAAAGATGTACCAAGCTACATGAGTTTGACAGAATCAACTAAGGCTAAACTCAAAGCTTACAGGAGTTCTTCGCAGAATTCTAAGAGAATCACAATGGACGATTGTCTGTCTCATAACACAAATTCAACCTTTCTGAATGGATATAATAGTATAAGCAGTTCTGGTTCCGACCCTTCAGTTAATATATGGAAGGATCGTTGTGCAACACCTCTACGAGCAAGTTATTATCAAAAACGATACGGCAGGAGATAG 1260 0.4254 MGASGKWFKSFLSHKKISSSTITTDQEKKINGDNKSGTSKKKWKLWKSSSEGSSSSMMKKGGCSTSLTAAAVAVVVRAQPKDFNLIRQEWAAIRIQALFRAFLARRALRALRAVVRLQAIFRGRQVRKQAAVTLRCMQALVRVQARVRARNVRKSPEGKAVQQLLDDHRNQADSVRFVEQGWCEIPGTADEVKAKLRLRQEGAIKRDRAMAYSLSAQSRMSASPNSKSMTPLKHHHNRDNKSLGNGLLERWMANKPWESPMSIRKSEEIVPTFQTRRNGMTTRISALKICQQTPSSSTISSEYMNDDSVVSSSCTSGSPSIMPFSNNTVKVEVTEEKDVPSYMSLTESTKAKLKAYRSSSQNSKRITMDDCLSHNTNSTFLNGYNSISSSGSDPSVNIWKDRCATPLRASYYQKRYGRR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00298 419 MobiDBLite consensus disorder prediction 19 60 - -
Vifa5g00298 419 Gene3D - 86 136 - -
Vifa5g00298 419 Pfam IQ calmodulin-binding motif 112 129 IPR000048 GO:0005515
Vifa5g00298 419 Pfam IQ calmodulin-binding motif 90 109 IPR000048 GO:0005515
Vifa5g00298 419 PANTHER IQ-DOMAIN 5-RELATED 1 393 - -
Vifa5g00298 419 ProSiteProfiles IQ motif profile. 112 139 IPR000048 GO:0005515
Vifa5g00298 419 ProSiteProfiles IQ motif profile. 88 116 IPR000048 GO:0005515
Vifa5g00298 419 MobiDBLite consensus disorder prediction 216 230 - -
Vifa5g00298 419 MobiDBLite consensus disorder prediction 216 240 - -
Vifa5g00298 419 SMART iq_5 87 109 IPR000048 GO:0005515
Vifa5g00298 419 SMART iq_5 110 131 IPR000048 GO:0005515
Vifa5g00298 419 MobiDBLite consensus disorder prediction 28 47 - -
Vifa5g00298 419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 130 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00298 Vifa-Chr5 44478459 44480248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00298 1 401 IQD Protein Family AT1G72670 44.213 3.06e-88 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00298 - - tpra:123894121 553.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00298 5 44478459 44480248 Vifa4g01343 4 398739618 398741756 PCT