Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00293 ATGTTCTTGTCATTGGCATTTGGGGTATGGGCGGTATTGGCAAGACAACTCTTGCAGCTGCAGTGTATAACCGTCTTTGTTACCGAAGAATCAGAGAAGCATGGAATGATTTATGTGAAGAATAAAATTCTCTCTATATTGCTTAAGGAAAATGATCTACATATGGGTACACCTAACGGAGTTCCCCCTTATGTTAAGAGAAGACTCGCACGTAAAAAGGTTCTTCTCGTTCTCGATGACATCAATGACTTAGAGCACCTTGAGAATTTAGTTGGAGGACTTGATTGGTTTGGATCTGGCAGTAGAATCATTGTAACAACCAGAGATAAGCAAGTGCTTGGTAAAAGAGTCAATTGTATATATGAGGCCAAGGCATTAGAGTCTGATGATGCTATTAAACTTTTCATCATGAATGCTTAA 420 0.3905 MFLSLAFGVWAVLARQLLQLQCITVFVTEESEKHGMIYVKNKILSILLKENDLHMGTPNGVPPYVKRRLARKKVLLVLDDINDLEHLENLVGGLDWFGSGSRIIVTTRDKQVLGKRVNCIYEAKALESDDAIKLFIMNA 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00293 139 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 139 IPR044974 GO:0006952
Vifa5g00293 139 Gene3D - 12 120 IPR027417 -
Vifa5g00293 139 Pfam NB-ARC domain 25 135 IPR002182 GO:0043531
Vifa5g00293 139 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 138 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00293 Vifa-Chr5 44054226 44054645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00293 47 139 WRKY Transcription Factor Family AT5G45050 42.553 2.58e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00293 - - lja:Lj3g3v0323300.1 196.052