Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00288 ATGTCTAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTACTACCAGTTATCCTCAACAATACTTTTCTCCTTCACAAACTCAAACTCATGACGAGACTCCGGCGAAGAAAAGGAGAAACCCTCCTGGCAAGCCAGACCTGGAAGCTGAAGTTATAGCTTTATCACCGAAGACACTTATGGCGACAAATAGATTCATATGTGAGATCTGCAACAAAGGATTTCAAAGAGATCAGAATCTTCAACTTCATAAAAGAGGACACAATTTACCATGGAAGTTGAAGCAGAGAACGGGGAATGAGATGATAAGGAAGAAAGTATATGTATGTCCAGAACCAACTTGTGTGCACCATGAACCATCAAGAGCCTTAGGGGATTTAACTGGTATCAAAAAGCACTTTTGCAGAAAGCACGGTGAGAAAAAGTGGAAATGTGATAAGTGCTCTAAGAAGTATGCTGTTCAATCAGATTGGAAAGCTCACTCCAAAACCTGTGGTACAAGAGAATATAGATGTGACTGTGGAACCCTCTTCACAAGGAGGGACAGTTTCATAACTCACAGAGCCTTCTGTGATGCATTAGCAGAAGAGAGTTCAAGAAGTGTAATTCATCAACCAAGCTCTCACAACATGATCAATCACCAAACTCAAGAAATACAAGGTTTCACATTAAAGAAAGAGCATCAAAATTTCAGTTTTCTAAAGCCAGAAATTCAAACACCATCATGGCTTGAATTAGAACAAGATCTAAACCTTCATGAAAACCCTAACCCTAGAAATGGTCCTACTACACTTCCATCCTACCAACCATCTTCTGCAGTTTCACCTCACATGTCAGCTACAGCATTGTTACAGAAAGCAGCTCAGATGGGTTCAACCAGCTCATCCCAACAACAATCCATGATCATGATAAGTGGGACCCACCAACACGGTCACGTGTCTCTTGATGACTCTTCCACCAACAGCAACATGTTAAACTCAAATGGTCATTTTGGTTTGAATTTGTCCTCATGTGAAAACCAAATGATTAACAACTCTTTCTCTTCTTCTGGCTTTCATGGAACAACAACCACCATGGATGACCGTGGCGCCGTTACCGTCGCCGGAGGAAATGATGCATTTACAAGAGATTTCTTGGGTTTAAGACCTTTATCTGATAGTGATATTCTCAGTATTACTGGTATGGGAAACTGCATGGACTCTTCAAATTCCCATAATCAACCAAACCAAACTCAAAAACCATGGCAAGGTAATTAG 1254 0.4083 MSNLTSASGEASATTSYPQQYFSPSQTQTHDETPAKKRRNPPGKPDLEAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRTGNEMIRKKVYVCPEPTCVHHEPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFTRRDSFITHRAFCDALAEESSRSVIHQPSSHNMINHQTQEIQGFTLKKEHQNFSFLKPEIQTPSWLELEQDLNLHENPNPRNGPTTLPSYQPSSAVSPHMSATALLQKAAQMGSTSSSQQQSMIMISGTHQHGHVSLDDSSTNSNMLNSNGHFGLNLSSCENQMINNSFSSSGFHGTTTTMDDRGAVTVAGGNDAFTRDFLGLRPLSDSDILSITGMGNCMDSSNSHNQPNQTQKPWQGN 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00288 417 MobiDBLite consensus disorder prediction 1 47 - -
Vifa5g00288 417 MobiDBLite consensus disorder prediction 397 417 - -
Vifa5g00288 417 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Vifa5g00288 417 MobiDBLite consensus disorder prediction 252 273 - -
Vifa5g00288 417 SUPERFAMILY beta-beta-alpha zinc fingers 64 162 IPR036236 -
Vifa5g00288 417 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 400 IPR031140 -
Vifa5g00288 417 SMART c2h2final6 65 87 IPR013087 -
Vifa5g00288 417 SMART c2h2final6 142 162 IPR013087 -
Vifa5g00288 417 SMART c2h2final6 107 137 IPR013087 -
Vifa5g00288 417 MobiDBLite consensus disorder prediction 31 45 - -
Vifa5g00288 417 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Vifa5g00288 417 FunFam protein indeterminate-domain 12-like 44 113 - -
Vifa5g00288 417 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Vifa5g00288 417 Gene3D Classic Zinc Finger 43 112 - -
Vifa5g00288 417 Gene3D Classic Zinc Finger 130 208 - -
Vifa5g00288 417 MobiDBLite consensus disorder prediction 1 30 - -
Vifa5g00288 417 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00288 Vifa-Chr5 43479111 43480888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00288 1 401 IDZ Gene Family AT1G55110 50.917 5.76e-126 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa5g00288 zf-C2H2_jaz 4.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00288 K25870 - cam:101511798 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00288 5 43479111 43480888 Vifa4g01350 4 403527183 403529271 PCT