Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00286 ATGAACAACATTCCAAGAAACAACAACAGCAACGGAGGAACCCCACAGGCTTGTTCTGCTTGTAAATACCAACGTAGGAAGTGCGGTCCAACCTGTATTCTCGCACCATATTTTCCTCACGAACGTCAAAAACAGTTCCTCAACGCCCATAAATTATTCGGCGTTGGTAAAATCACCAACATGCTTAAGAATGTTGCTCCTGAATCCCGAGATCTAACCATGTCTAGTATTGTTTATCAGGCTGATATGCGTGCTGCGGATCCTGTTGGTGGTTGTTATCGACATATTCAGCATCTTCAATCTCAGATTGATTATTCTACTGCTGAGCTTCATTTTGTTCTTCAACAACTTGCTATTTGTAGAGCCGCAGCTTCTTCTTCTTCCAACAATCATCATCATTATAATGATTATAATGATCATGAAGATATTATTATTCCACCTCATTATCAACCTCATTTTGTTGAAGAACAACTGGACGATGTTAATATGTTTCAACAACCGCAGCCGCAAATGCAACCGCAATATGTTGTTGATGATTTTGTCGGGGTTAACCCTAATTATGTTCCTTTGCAAGAGGATCTCAACACGTGGGTGAATTCTATACCGTTGTCGCCGTTAACTCTGCAGGATAACAAAAAGGAGGAGGATGAGATGGACCAAGAACGGGTTGGTGATGATCGTTTGAATGATGATCAGAAACCTGTTTTTGACCTAACGAATTCTTCGGATATCGGCAGACATAGCACTAATGATCCGAGACAACAGTTATGA 771 0.4086 MNNIPRNNNSNGGTPQACSACKYQRRKCGPTCILAPYFPHERQKQFLNAHKLFGVGKITNMLKNVAPESRDLTMSSIVYQADMRAADPVGGCYRHIQHLQSQIDYSTAELHFVLQQLAICRAAASSSSNNHHHYNDYNDHEDIIIPPHYQPHFVEEQLDDVNMFQQPQPQMQPQYVVDDFVGVNPNYVPLQEDLNTWVNSIPLSPLTLQDNKKEEDEMDQERVGDDRLNDDQKPVFDLTNSSDIGRHSTNDPRQQL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00286 256 MobiDBLite consensus disorder prediction 209 233 - -
Vifa5g00286 256 MobiDBLite consensus disorder prediction 208 256 - -
Vifa5g00286 256 MobiDBLite consensus disorder prediction 234 256 - -
Vifa5g00286 256 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Vifa5g00286 256 Pfam Lateral organ boundaries (LOB) domain 17 112 IPR004883 -
Vifa5g00286 256 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00286 Vifa-Chr5 43044566 43045640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00286 16 133 AS2 family AT3G13850 58.475 1.51e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa5g00286 LOB 3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00286 - - mtr:11423276 288.115