Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00285 ATGGCAAGCAACATAGCAGAAAGGGTGCAATATCCATTAGACTCTTCCTCCTACAAGATCATCGACGAGATTGGCGCCGGTAACAGCGCTGTCGTCTACAAGGCAATCTGCGTCCCCATAAACTCGACACCAGTTGCTATAAAATCCATAGACTTCGAGCGTTCGCGCCCTGACCTTGACGATGTTCGACGTGAAGCGAAGACATTATCACTTCTTTCTCATCCCAACATCCTCAAAGCTCATTGTTCCTTCACAGTCGACCGTCGGCTTTGGGTGGTTATGCCATTCATGGCAGGAGGTTCATTACAATCCATAATCTCTCACTCTTTCCAGAACGGCCTAACCGAACAATCCATAGCTGTTATTCTCATAGACACTCTTAATGCTCTTTCTTACCTTCATGGACAAGGTCACCTTCATAGAGATATCAAATCTGGTAACATCCTTGTTGACTCAAATGGATTAGTGAAACTTGCTGACTTTGGTGTTTCTGCTTCCATTTATGAATCAAACAACGCTGTAGGAGCATGTTCTTCTTATTCATCTTCATCTTCTAATTCTTCTTCTTCTCTTATGTTTACTGATTTTGCTGGAACACCTTATTGGATGGCTCCTGAGGTTATTCATTCTCATAATGGTTACAGTTTCAAAGCTGATATATGGTCTTTTGGGATAACTGCTTTGGAGTTAGCACATGGAAGACCACCACTTTCTCATCTTCCTCCTTCTAAGTCAATGATGCTTAACATCACCAAGAGGTTTAGGTTTTCTGATTTTGATAAATATATTTATAAGGGTCATAGTGGTGGAAGTAATAAATTTTCTAAGGCTTTTAAGGATATGGTTGCGTCTTGTTTGAATCAAGATCCTACAAAAAGACCTTCAGCTGAGAAGTTGCTTAAGCATTCGTTCTTTAAAAATTGTAAGGGGCCGGAGTTTTTGGTGAAGAATGTGTTGAATGGTTTGCCTAGTGTTGAGAAAAGGTATAAAGAGATCAAAGTTACAATGGGTGGAGATTCAAAGGGTAATGATGATGATGATGATGGTGATGATGAGGACTCAGTGGTGAATGTGAAGCAGAGAAGAATTAGTGGTTGGAATTTCAATGAAGACGGGTTGAAACTTGAACCGGTATTCCCAAAGGATCAATGCAGAGAAGATCATGATGTGGTGAAACAAGTTCGGTTTGAAGAAGAAAATGAGATCCGAGAGGAGGAAGATGTTGCATCATCAGGAACTGTGATTGAGACAAACCTCGGTGCTTCTGATGTTAGTGGTGTTGTGAAGAATCGTGAAGCGACGTTGGCAACTCTGAGTGTGTTGAAAGGGAGCTTGGAACAAGAACTAGGACAAGTGAAGTTTCTGATGAGCCTAATTGGTGGAAATGGAGAGGAGAATCATGTGGCTGAGAGCGAGGAGATTTCTAAGTTGAGGATGGAGTTAGAAACTGAGAGGAAGAAGAATTTGCAGTTGGAGTTGCAGCTTGAGAACATCAAGCTTCACCTAATTTCCTCAACTCTCAATACTCCTACAAGTTAA 1539 0.4133 MASNIAERVQYPLDSSSYKIIDEIGAGNSAVVYKAICVPINSTPVAIKSIDFERSRPDLDDVRREAKTLSLLSHPNILKAHCSFTVDRRLWVVMPFMAGGSLQSIISHSFQNGLTEQSIAVILIDTLNALSYLHGQGHLHRDIKSGNILVDSNGLVKLADFGVSASIYESNNAVGACSSYSSSSSNSSSSLMFTDFAGTPYWMAPEVIHSHNGYSFKADIWSFGITALELAHGRPPLSHLPPSKSMMLNITKRFRFSDFDKYIYKGHSGGSNKFSKAFKDMVASCLNQDPTKRPSAEKLLKHSFFKNCKGPEFLVKNVLNGLPSVEKRYKEIKVTMGGDSKGNDDDDDGDDEDSVVNVKQRRISGWNFNEDGLKLEPVFPKDQCREDHDVVKQVRFEEENEIREEEDVASSGTVIETNLGASDVSGVVKNREATLATLSVLKGSLEQELGQVKFLMSLIGGNGEENHVAESEEISKLRMELETERKKNLQLELQLENIKLHLISSTLNTPTS 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00285 512 ProSitePatterns Protein kinases ATP-binding region signature. 24 48 IPR017441 GO:0005524
Vifa5g00285 512 Coils Coil 474 501 - -
Vifa5g00285 512 FunFam Serine/threonine-protein kinase BLUS1 100 350 - -
Vifa5g00285 512 FunFam Serine/threonine-protein kinase BLUS1 7 96 - -
Vifa5g00285 512 SUPERFAMILY Protein kinase-like (PK-like) 15 311 IPR011009 -
Vifa5g00285 512 MobiDBLite consensus disorder prediction 336 355 - -
Vifa5g00285 512 ProSiteProfiles Protein kinase domain profile. 18 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00285 512 Pfam Protein kinase domain 18 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00285 512 Gene3D Phosphorylase Kinase; domain 1 6 96 - -
Vifa5g00285 512 Gene3D Transferase(Phosphotransferase) domain 1 100 346 - -
Vifa5g00285 512 SMART serkin_6 18 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00285 512 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 10 425 IPR047173 GO:0043539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00285 Vifa-Chr5 43037420 43038958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00285 1 490 MAP Kinase Kinase Kinase Kinase AT4G14480 55.489 2.18e-176 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vifa5g00285 Pkinase 1.8e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00285 K08835 - gmx:100820227 649.432