Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00277 ATGGACCTCATCCATGGAACAATTGAAGCTACAATTTTCAATGCAACTCCTTACTCTCCTTCATTTCCTTTCAACTGTTTATGCATAAATGGAAAGCCTGCATATGTGACAATCAAAATAGACAACAAGAAAGTGGCAAAAACAACACAAGAAAGTGAACGTATTTGGAACCAAACATTTCAAATTCATTGTGCTCATCTATCTGATTCAACCATCACCATTACACTGAAAACATCATGTTCTATATTAGGAAAATTTCACATCAAGGCACAACAGTTGAAGCAAGAGAGTTTGATTGATGGATTCTTCCCTCTCCTCATGGAAAATGGTAAACCAAATCAAGAACTAAAACTAAGGTTTATATTATGGTTCAAGCCAGCAAATTTGGAACCAAGTTGGTCAAAGCTACTAAGTAGTGAAGAGTTTCAAGGGCTAAGGGATGCTACATTCTCACAAAGGTCTAATTGTCATGTTAAGCTCTATCATGATGCTCATCATTCACCTACTTTTCAACCTCCTTTAGATATTTGTGGAGTTCCAAGACTGCTATGGGAAGATGTTTATAAAGCTATTGAGGGTGCAAAGTATTTAGTTTATATTGCAGGATGGTCTTTCAATCCAAAAATGGTTTTGGTTAGAGATCCTCAGACAGAAATCCCACATGCTAGAGAAATAAAGTTAGGTGATTTGTTGAAGAAGAAAGCAGATGAAGGAGTTGTTGTAAGGATTATGATTTGGGATGATGAGACATCATTGCCACTTATCAAGAACAAAGGTGTGATGAACACACATGATGAGGATGCATTTGCTTATTTTAAACATACAAAAGTAGTATGCAGAAAGTGTCCTAGATTACATCATAAATTCCCAACAATTTTTGCTCATCATCAGAAAACTGTAACTGTGGATACGAAAGCGCCTAACTCTGTCAATGATAGAGAAATTATGAGTTTTTTAGGCGGTTTAGACTTGTGCGACGGACGATATGATACCGAGAAGCATTCATTGTTTCAAACACTTACAAAGGAATCACATTACCATGATTTCTACCAAACAAGCATTGCAGGAGCAAGCCTCAAGAAAGGAGGTCCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTACCGGTGACGCGGCTTGGGATATTCTAACCAATTTTGAACAAAGATGGACAAAACAATGTGATTCATCGCTTCTAGTCCCTGCAAACACCTTACAAAATCTCATTCCTATTTCCTCAGCGAGCACTTCCATCGAAAGAAATTGGAAAGTACAAGTATATCGGTCGATCGACCATGTCTCGGCTAGCCAACTGTTTCGAAAACTAACAGTTGAGACTAGCATCCATGAAGCTTACGTCGAAGCAATTAGGCGCGCCGACAAGTTTGTGTACATTGAAAACCAATACTTCATTGGAGGATGCCATTTGTGGCAGAAAGATAGAAACAGTGGCTGCAAAAATTTGATACCTATTGAGATTGCACTCAAGGTAGTCAACAAGATTAAAGCAAGACAAAGATTTGCAGTGTATATAGTCATACCAATGTGGCCAGAAGGAGGGCCTGAGAGTGAACCAGTTCAAGATATATTGCATTGGACAAGAGAAACAATGACAATGATGTATAAGTTGATTGGAGAAGCAATTATAGAAAGTGGTGAGCCAAGACATCCAAGAGATTATTTGAATTTCTTTTGCCTTGCAAATAGGGAAAAGAAGGAAAATGAAGAATATATTCCTCCACATTCTCCTCATCCTGAAACTGAATATTGGAATGCACAGAAAAATAGAAGATTCATGGTCTATGTTCACTCCAAGCTTATGATAGGATCGGCAAATGTGAACCAAAGATCGATGGACGGGCAAAGAGACACAGAGATTGCAATTGGAGGCTATCAATCTCAAGGAGTTGATCACCACATGACCAGAGGTGATATTCATGCATACAGAATGTCAATGTGGTATGAGCACACAGGGAGAGCTGAGGACTTGTTTTTAAAGCCAGAAAGTTTAGAATGTGTGCAGAGAATGTGTTCAATAGGAGATAAAATGTGGAAAATCTATAGTAGTGAAGAAATAGTGGACATGGAAGGCGTGCATCTTGTAACTTACCCAGTGGTAGTGACAAAAGATGGATCTGTGGAGGACTTTAATAATGGTGAAGAACATTTTCCTGATACAAACTCTCCAGTGAAAGGGAGAAGATCAAAGTTATTACCCTCTGTCATTACTACTTAG 2238 0.3852 MDLIHGTIEATIFNATPYSPSFPFNCLCINGKPAYVTIKIDNKKVAKTTQESERIWNQTFQIHCAHLSDSTITITLKTSCSILGKFHIKAQQLKQESLIDGFFPLLMENGKPNQELKLRFILWFKPANLEPSWSKLLSSEEFQGLRDATFSQRSNCHVKLYHDAHHSPTFQPPLDICGVPRLLWEDVYKAIEGAKYLVYIAGWSFNPKMVLVRDPQTEIPHAREIKLGDLLKKKADEGVVVRIMIWDDETSLPLIKNKGVMNTHDEDAFAYFKHTKVVCRKCPRLHHKFPTIFAHHQKTVTVDTKAPNSVNDREIMSFLGGLDLCDGRYDTEKHSLFQTLTKESHYHDFYQTSIAGASLKKGGPREPWHDAHACVTGDAAWDILTNFEQRWTKQCDSSLLVPANTLQNLIPISSASTSIERNWKVQVYRSIDHVSASQLFRKLTVETSIHEAYVEAIRRADKFVYIENQYFIGGCHLWQKDRNSGCKNLIPIEIALKVVNKIKARQRFAVYIVIPMWPEGGPESEPVQDILHWTRETMTMMYKLIGEAIIESGEPRHPRDYLNFFCLANREKKENEEYIPPHSPHPETEYWNAQKNRRFMVYVHSKLMIGSANVNQRSMDGQRDTEIAIGGYQSQGVDHHMTRGDIHAYRMSMWYEHTGRAEDLFLKPESLECVQRMCSIGDKMWKIYSSEEIVDMEGVHLVTYPVVVTKDGSVEDFNNGEEHFPDTNSPVKGRRSKLLPSVITT 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00277 745 Gene3D Endonuclease Chain A 180 419 - -
Vifa5g00277 745 Gene3D Endonuclease Chain A 441 643 - -
Vifa5g00277 745 Pfam C2 domain 34 105 IPR000008 -
Vifa5g00277 745 Pfam Phospholipase D Active site motif 292 328 IPR001736 GO:0003824
Vifa5g00277 745 SUPERFAMILY Phospholipase D/nuclease 419 674 - -
Vifa5g00277 745 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 291 328 IPR001736 GO:0003824
Vifa5g00277 745 PIRSF PLD_plant 3 745 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vifa5g00277 745 PANTHER PHOSPHOLIPASE D 32 727 IPR015679 -
Vifa5g00277 745 SUPERFAMILY Phospholipase D/nuclease 142 402 - -
Vifa5g00277 745 Pfam Phospholipase D C terminal 662 734 IPR024632 -
Vifa5g00277 745 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 120 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00277 Vifa-Chr5 40839750 40842506 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00277 26 745 Phospholipase D Gene Family (Wang group) AT1G55180 61.186 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00277 K01115 - gmx:100807431 1329.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00277 5 40839750 40842506 Vifa5g00277 5 40839750 40842506 ECH