Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00276 ATGGACCTCATCCATGGAACAATTGAAGCTACAATTTTCAATGCAACTCCTTACTCTCCTTCATTTCCTTTCAACTGTTTATGCATAAATGGAAAGCCTGCATATGTGACAATCAAAATAGACAACAAGAAAGTGGCAAAAACAACACAAGAAAGTGAACGTATTTGGAACCAAACATTTCAAATTCATTGTGCTCATCTATCTGATTCAACCATCACCATTACACTGAAAACATCATGTTCTATATTAGGAAAATTTCACATCAAGGCACAACAGTTGAAGCAAGAGAGTTTGATTGATGGATTCTTCCCTCTCCTCATGGAAAATGGTAAACCAAATCAAGAACTAAAACTAAGGTTTATATTATGGTTCAAGCCAGCAAATTTGGAACCAAGTTGGTCAAAGCTACTAAGTAGTGAAGAGTTTCAAGGGCTAAGGGATGCTACATTCTCACAAAGGTCTAATTGTCATGTTAAGCTCTATCATGATGCTCATCATTCACCTACTTTTCAACCTCCTTTAGATATTTGTGGAGTTCCAAGACTGCTATGGGAAGATGTTTATAAAGCTATTGAGGGTGCAAAGTATTTAGTTTATATTGCAGGATGGTCTTTCAATCCAAAAATGGTTTTGGTTAGAGATCCTCAGACAGAAATCCCACATGCTAGAGAAATAAAGTTAGGTGATTTGTTGAAGAAGAAAGCAGATGAAGGAGTTGTTGTAAGGATTATGATTTGGGATGATGAGACATCATTGCCACTTATCAAGAACAAAGGTGTGATGAACACACATGATGAGGATGCATTTGCTTATTTTAAACATACAAAAGTAGTATGCAGAAAGTGTCCTAGATTACATCATAAATTCCCAACAATTTTTGCTCATCATCAGAAAACTGTAACTGTGGATACGAAAGCGCCTAACTCTGTCAATGATAGAGAAATTATGAGTTTTTTAGGCGGTTTAGACTTGTGCGACGGACGATATGATACCGAGAAGCATTCATTGTTTCAAACACTTACAAAGGAATCACATTACCATGATTTCTACCAAACAAGCATTGCAGGAGCAAGCCTCAAGAAAGGAGGTCCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTACCGGTGACGCGGCTTGGGATATTCTAACCAATTTTGAACAAAGATGGACAAAACAATGTGATTCATCGCTTCTAGTCCCTGCAAACACCTTACAAAATCTCATTCCTATTTCCTCAGCGAGCACTTCCATCGAAAGAAATTGGAAAGTACAAGTATATCGGTCGATCGACCATGTCTCGGCTAGCCAACTGTTTCGAAAACTAACAGTTGAGACTAGCATCCATGAAGCTTACGTCGAAGCAATTAGGCGCGCCGACAAGTTTGTGTACATTGAAAACCAATACTTCATTGGAGGATGCCATTTGTGGCAGAAAGATAGAAACAGTGGCTGCAAAAATTTGATACCTATTGAGATTGCACTCAAGGTAGTCAACAAGATTAAAGCAAGACAAAGATTTGCAGTGTATATAGTCATACCAATGTGGCCAGAAGGAGGGCCTGAGAGTGAACCAGTTCAAGATATATTGCATTGGACAAGAGAAACAATGACAATGATGTATAAGTTGATTGGAGAAGCAATTATAGAAAGTGGTGAGCCAAGACATCCAAGAGATTATTTGAATTTCTTTTGCCTTGCAAATAGGGAAAAGAAGGAAAATGAAGAATATATTCCTCCACATTCTCCTCATCCTGAAACTGAATATTGGAATGCACAGAAAAATAGAAGATTCATGGTCTATGTTCACTCCAAGCTTATGATAGTGGATGACCTATACATATTAATAGGATCGGCAAATGTGAACCAAAGATCGATGGACGGGCAAAGAGACACAGAGATTGCAATTGGAGGCTATCAATCTCAAGGAGTTGATCACCACATGACCAGAGGTGATATTCATGCATACAGAATGTCAATGTGGTATGAGCACACAGGGAGAGCTGAGGACTTGTTTTTAAAGCCAGAAAGTTTAGAATGTGTGCAGAGAATGTGTTCAATAGGAGATAAAATGTGGAAAATCTATAGTAGTGAAGAAATAGTGGACATGGAAGGCGTGCATCTTGTAACTTACCCAGTGGTAGTGACAAAAGATGGATCTGTGGAGGACTTTAATAATGGTGAAGAACATTTTCCTGATACAAACTCTCCAGTGAAAGGGAGAAGATCAAAGTTATTACCCTCTGTCATTACTACTTAG 2262 0.3842 MDLIHGTIEATIFNATPYSPSFPFNCLCINGKPAYVTIKIDNKKVAKTTQESERIWNQTFQIHCAHLSDSTITITLKTSCSILGKFHIKAQQLKQESLIDGFFPLLMENGKPNQELKLRFILWFKPANLEPSWSKLLSSEEFQGLRDATFSQRSNCHVKLYHDAHHSPTFQPPLDICGVPRLLWEDVYKAIEGAKYLVYIAGWSFNPKMVLVRDPQTEIPHAREIKLGDLLKKKADEGVVVRIMIWDDETSLPLIKNKGVMNTHDEDAFAYFKHTKVVCRKCPRLHHKFPTIFAHHQKTVTVDTKAPNSVNDREIMSFLGGLDLCDGRYDTEKHSLFQTLTKESHYHDFYQTSIAGASLKKGGPREPWHDAHACVTGDAAWDILTNFEQRWTKQCDSSLLVPANTLQNLIPISSASTSIERNWKVQVYRSIDHVSASQLFRKLTVETSIHEAYVEAIRRADKFVYIENQYFIGGCHLWQKDRNSGCKNLIPIEIALKVVNKIKARQRFAVYIVIPMWPEGGPESEPVQDILHWTRETMTMMYKLIGEAIIESGEPRHPRDYLNFFCLANREKKENEEYIPPHSPHPETEYWNAQKNRRFMVYVHSKLMIVDDLYILIGSANVNQRSMDGQRDTEIAIGGYQSQGVDHHMTRGDIHAYRMSMWYEHTGRAEDLFLKPESLECVQRMCSIGDKMWKIYSSEEIVDMEGVHLVTYPVVVTKDGSVEDFNNGEEHFPDTNSPVKGRRSKLLPSVITT 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00276 753 Pfam Phospholipase D Active site motif 602 626 IPR001736 GO:0003824
Vifa5g00276 753 Pfam Phospholipase D Active site motif 292 328 IPR001736 GO:0003824
Vifa5g00276 753 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 120 IPR035892 -
Vifa5g00276 753 SUPERFAMILY Phospholipase D/nuclease 419 682 - -
Vifa5g00276 753 PANTHER PHOSPHOLIPASE D 32 735 IPR015679 -
Vifa5g00276 753 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 291 328 IPR001736 GO:0003824
Vifa5g00276 753 PIRSF PLD_plant 3 753 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vifa5g00276 753 SMART pld_4 291 328 IPR001736 GO:0003824
Vifa5g00276 753 SMART pld_4 599 626 IPR001736 GO:0003824
Vifa5g00276 753 SUPERFAMILY Phospholipase D/nuclease 142 402 - -
Vifa5g00276 753 Gene3D Endonuclease Chain A 180 419 - -
Vifa5g00276 753 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 599 626 IPR001736 GO:0003824
Vifa5g00276 753 Pfam C2 domain 34 105 IPR000008 -
Vifa5g00276 753 Gene3D Endonuclease Chain A 440 644 - -
Vifa5g00276 753 Pfam Phospholipase D C terminal 670 742 IPR024632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00276 Vifa-Chr5 40839750 40842506 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00276 26 753 Phospholipase D Gene Family (Wang group) AT1G55180 62.129 0.0 969
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00276 K01115 - gmx:100807431 1350.88