Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00274 ATGGACACAGAAGAAGACCCTCCTCAAAACTCAGCTAAAAGACAGAAATGTTCAGCATGCTATAAACAATATAAGAAGAAAGAACATCTTATTCAGCACATGAAAACCTCTTACCACTCTATCCATGAGCCGCAATGCGTGATCTGTAGAAAGCACTGCAAATCTTTTGAATCTCTGAGGGAACATCTTATGGGACCTTTGGCTAAAGGACTTTGTTCAGGGATTTTCTCGCAAGGGGGTTGCAAACTTTGTTTGACCCTAGCTGATAGTCCTGCTTCTCTCAGTGAGCATAGAGAAACTTGTTGCCTATCTGCCCCTGTTCCTCTTGGCACAAGTGAATTGCCCTATACAGACTCCAATATCGATTTTCTGGATTCTTATGTTCAAAATGATGCTGACCGGCGTCCTAAAGCAATTGCATTGGACTGTGAAATGGTTGGTGGTGGAAGTGATGGATCTCTGGAAGTTTGTGCTAGAGTATGCTTGGTTGACGAAGATGAGAACTTAATCTTGCACACATATGTAAAACCTCGACTCCCTGTTACAAATTATAGGTATGATATAACTGGGCTGACCGAAGAGCATCTTCGAGATGGGGTGCCACTTAAGCAAGTTCGGGAAAAGATATTGCAAATTTTATACAATGGAGAGTCCATTGCAAAAGTTAGAATGGATGGTGGAAAGGCCAGGCTTCTTGTAGGGCATTCTTTGGCATACGATTTGGATTGCTTGGAAATGAGTTACCCTGATCATTTGTTGAGAGACACTGCAAAGTACCGTCCATTGATGAAAACAAACGGTTCCAGCCACTCACTCAAGTATCTTACCAGAACATATCTAGGTTATGATATCCAAACTGGCACACACGATCCATTCGAAGATTGCATTTCTTCGATGAGACTGTACAAGAGAATGCGAGGTCAAAGCCATGAGGAGAAAGGCAACGGAAAGTTGACTCCAAGTGACAACATAGTTGAAATGTGTGACAGGTGGAGATCCAAGGAACTGGACAACCTTACTCCAGATGAACTCTACGCCATCTCGGAATCAGACTATAAGTGTTGGTGTTTGGATTTGAAGCCAAAATTGGCAAATGCTTAG 1101 0.4251 MDTEEDPPQNSAKRQKCSACYKQYKKKEHLIQHMKTSYHSIHEPQCVICRKHCKSFESLREHLMGPLAKGLCSGIFSQGGCKLCLTLADSPASLSEHRETCCLSAPVPLGTSELPYTDSNIDFLDSYVQNDADRRPKAIALDCEMVGGGSDGSLEVCARVCLVDEDENLILHTYVKPRLPVTNYRYDITGLTEEHLRDGVPLKQVREKILQILYNGESIAKVRMDGGKARLLVGHSLAYDLDCLEMSYPDHLLRDTAKYRPLMKTNGSSHSLKYLTRTYLGYDIQTGTHDPFEDCISSMRLYKRMRGQSHEEKGNGKLTPSDNIVEMCDRWRSKELDNLTPDELYAISESDYKCWCLDLKPKLANA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00274 366 Gene3D Classic Zinc Finger 2 65 - -
Vifa5g00274 366 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 330 IPR047021 GO:0004527
Vifa5g00274 366 Pfam Exonuclease 139 302 IPR013520 -
Vifa5g00274 366 CDD REX4_like 139 303 IPR037431 GO:0006364|GO:0008408
Vifa5g00274 366 SUPERFAMILY Ribonuclease H-like 138 308 IPR012337 -
Vifa5g00274 366 Gene3D - 134 320 IPR036397 GO:0003676
Vifa5g00274 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Vifa5g00274 366 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Vifa5g00274 366 SMART exoiiiendus 137 311 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00274 Vifa-Chr5 40357053 40359540 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00274 1 358 C2H2 Transcription Factor Family AT3G27970 51.253 4.68e-133 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00274 K18327 - gmx:100788682 573.548