Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00272 ATGTTAATTGGGTTCTGTATAGAGGATAAAAGAAGACTTCTGGTTTATGAATATATATGCAATGGATCATTGGATACTCATTTATACGGGAGACAGCATAAACCGTTAGAATGGTCTGCGCGGCAGAAAATTGCTGTTGGAGCTGCCCGAGGGTTGCGATATCTTCATGAAGAGTGCAGAGTGGGATGCATTGTTCACCGTGACATGCGGCCCAACAACATTCTTATCACTCACGATTTTGAACCACTGGTTGGTGATTTTGGACTCGCAAGGTGGCAGCCTGACGGAGACACTGGAGTGGATACTCGAGTTATTGGGACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGTGGACAAATAACTGAAAAGGCTGATGTTTATTCCTTTGGAGTGGTATTAGTGGAGCTTGTGACCGGGCGTAAAGCTGTCGATATCAACCGGCCCAAAGGACAGCAGTGTCTTACAGAATGGGCACGACCACTGTTAGAAGAGTATGCCATTGAAGAACTGATTGATCCAAGGTTGGGAAGTCGCTATTCAGAACACGAGGTCTCTAGCATGCTGCATGCTGCATCCTTATGCATAAGGCGAGATCCTTATTCTAGACCACGCATGTCACAGGTTTTGCGAATACTAGAGGGTGACACGGTCATGGAATCACCACGCCAATTTGGTGGTTCCCCTTCCCTATGA 696 0.4612 MLIGFCIEDKRRLLVYEYICNGSLDTHLYGRQHKPLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVDTRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDINRPKGQQCLTEWARPLLEEYAIEELIDPRLGSRYSEHEVSSMLHAASLCIRRDPYSRPRMSQVLRILEGDTVMESPRQFGGSPSL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00272 231 PANTHER OS01G0750732 PROTEIN 1 220 - -
Vifa5g00272 231 ProSiteProfiles Protein kinase domain profile. 1 219 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00272 231 Pfam Protein kinase domain 2 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g00272 231 PIRSF ILK 1 222 - -
Vifa5g00272 231 SUPERFAMILY Protein kinase-like (PK-like) 2 215 IPR011009 -
Vifa5g00272 231 ProSitePatterns Tyrosine protein kinases specific active-site signature. 64 76 IPR008266 GO:0004672|GO:0006468
Vifa5g00272 231 Gene3D Transferase(Phosphotransferase) domain 1 19 225 - -
Vifa5g00272 231 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 19 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00272 Vifa-Chr5 39931740 39932961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00272 2 219 Trihelix Transcription Factor Family AT1G70460 52.466 1.27e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vifa5g00272 Pkinase 2.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00272 - - gmx:100789216 435.261