Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00271 ATGAATCGAGAACAGAAGCGAGGGAAGGTTGATAAGGGTTCTGATGGTGCTGAGAAGGTTATTGTTGCTGTTAAGGCGTCGAAGGAAATTCCGAAGACTGCGCTTGTTTGGTCGTTAACTCATGTTGTTCAGCCTGGTGATTGCATTACACTGCTAGTGGTTGTGCCTTCTCAAAATTCAGGCCGAAAATTATGGGGCTTCCCGCGGTTTGCTGGTGACTGTGCTAATGGACACAAGAAATCAGCAACGGCTGGAGCTAGTTCGGAGAACAAGAATGATATTACTGATTCTTGCTCTCAAATGATTCTTCAGCTTCATGATGTCTATGATCCGAATAAGATAAATGTTAGGATTAAAATTGTTTCTGGATCGCCTTGTGGAGCAGTGGCTGCGGAAGCTAAGAAAGTACAAGCCAAATGGGTTGTGTTAGACAAACATCTCAAGCATGAAGAAAAACAATGCATGGAAGAACTGCAATGTAACATTGCGGTTATGAAGGGTTCTCAACCTAAGACACTTCGCTTGAATTTGGTTGGATCACAGAAGAAGGATCTTGAAGAAACATGTCAATTACCTTCTGAGCAGCATGAGATGCTAGGAAAACAATCCGACAAGAAGAATGAGACATCATTTACTGCAACCGAAGCTGGCACTTCATCGGTTTCAAGCTCTGATCATGGAACTTCGCCATTTTGTGTCTCTGAAATCATTGCCAAGTCAAAGAAAGAGGAGACTATAGAAGAAAATCAAGAAACTGATGATACTATTTCTGACACGGACGGTGAACATTTGTCCGCATCTTCAGCAAGCTTGAGATTTCAGCCGTGGATGTCGGATTTATTTCTACGTAAACAGTCATCTCAACGTGAGGAGAAAAGGTCAGAGAGTTCGCGTAATATGCTTCAAACTTTCACAACAAGAGCTTTGCTAGAGAAGTTTTCGAGGCTTGACAGAGAAGCCGAAATTGAAATCTCAACCTCTATGTCATACTTGGAGTTCAGTGGAAGCGTTAGAGAAGCAGTAGCGTTATCTAGAAACGCCGCACCTGGCCCTCCTCCATTATGTTCAATATGTCAACACAAGGCTCCTGTTTTTGGAAAACCTCCAAGATGGTTCAGCTACGCTGAGTTGGAACTAGCCACTGATGGATTTTCACCAACCAATTTCTTGGCAGAAGGAGGGTTCGGATCTGTTCACAGGGGAGTTTTACCTGAAGGGCAAGTCATTGCTGTCAAGCAACATAAATTGGTAGTTCTCAAGGAGATCTTGAGTTCTGCTCAGAGGTAG 1287 0.4328 MNREQKRGKVDKGSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQNSGRKLWGFPRFAGDCANGHKKSATAGASSENKNDITDSCSQMILQLHDVYDPNKINVRIKIVSGSPCGAVAAEAKKVQAKWVVLDKHLKHEEKQCMEELQCNIAVMKGSQPKTLRLNLVGSQKKDLEETCQLPSEQHEMLGKQSDKKNETSFTATEAGTSSVSSSDHGTSPFCVSEIIAKSKKEETIEENQETDDTISDTDGEHLSASSASLRFQPWMSDLFLRKQSSQREEKRSESSRNMLQTFTTRALLEKFSRLDREAEIEISTSMSYLEFSGSVREAVALSRNAAPGPPPLCSICQHKAPVFGKPPRWFSYAELELATDGFSPTNFLAEGGFGSVHRGVLPEGQVIAVKQHKLVVLKEILSSAQR 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00271 428 PANTHER OS01G0750732 PROTEIN 156 417 - -
Vifa5g00271 428 FunFam Dual-specific kinase DSK1-like 11 166 - -
Vifa5g00271 428 MobiDBLite consensus disorder prediction 205 229 - -
Vifa5g00271 428 Gene3D HUPs 5 158 IPR014729 -
Vifa5g00271 428 MobiDBLite consensus disorder prediction 192 229 - -
Vifa5g00271 428 Gene3D Phosphorylase Kinase; domain 1 356 426 - -
Vifa5g00271 428 MobiDBLite consensus disorder prediction 242 264 - -
Vifa5g00271 428 SUPERFAMILY Protein kinase-like (PK-like) 364 420 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00271 Vifa-Chr5 39930058 39931704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00271 365 416 Trihelix Transcription Factor Family AT1G26150 57.692 1.14e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00271 - - gmx:100789216 644.425