Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00261 ATGGAGTGGTTCGCGAACCGTTGGACCGGCGTTGCTGCGGCGATCTGGATCCAATCCAGCTGCGGTGCATCGTACACCTTCAGCATCTACTCTCCGATTCTCAAATCATCGCAAGGCTACGATCAATCAACACTCGACACTGTTTCCGTCTTCAAAGACATCGGCGCTAACTTCGGTGTTCTCGCCGGCCTACTTTACTCCGCCGTGACGCCTTACGGTGACCGATCACATGCATCCAAGTCGAAGTGGAGTTCGCTCGGTGGTCCTTGGATTGTTGTCGCTGCAGGTGCTGTTCAGTGTTTTGTGGGCTTTTTGTTTATTTGGGCTTCTGTTGTGGGCTTCATCAATCAGCCTCCTGTTCCTCTCATGTGCTTTTTCGCTTGGCTTGCTGCTAATGGTCAGACTTTCTTGAATACTACCAATGTTGTTACTGGTTTGCGTAATTTTCCTCAATACGGTGGCACCATCATTGGTATCATGAAGGGTTTTCTTGGGCTAAGTGGAGCTATCCTGATTCAACTATATCATGCATTTTTTGACGGTCAACCAGCCACCTTCCTTTTGATGCTAGCTTGCTTACCTGCAATCATTTCTCTGTTGTTTATGTTTCTGTTGAGGATCTATGAATTGCAAGATTATGATTACAAAAAGCATTTGGATGATTTCTCCGTGGTCACTGTCATTATTGTTGTGTATCTCATGTTCATAATAGTTCTGCAGAATTTCGTGAGCTTACCATATTGGGCAAGGGTTTTTACATTTGTTGTTCTTATGGTTCTACTAGCATCGCCGTTTGGCATTGCTGTGAAGGCTTATTCGGAGGACTCGAGGATATTTTCACAAGGTCAATCCATTGAGACTGCTGCCCCTACAGTAGAATACCAAGAGCTGCCTAGAGAGGAGGTGCAAGTACAGGATACTTCAGGCGATATGTTGCCCCTTGAAGTAGAAATGAACATATTACAAGCTTTGTGTACCGTTGAGTTTTGGATGTTATTTGTGACCATGATAGCCGGTTTGGGTTCGGGGCTTACGGTGATAAATAATATGAGCCAAATAGGACAATCTTTTGGGTATAGTTCTATTCAAATTAGCAATATGGTGTCATTGTGGAGTATGTGGAATTTTCTTGGCCGTTTTGGTGGCGGCCATGTATCCGATTATATCATGCACGAAAGAGGTTGGCCGCGTCCGTTGTTGTTGACTGTAACTCTGGGGATTACAATTCTTGGCCATTTAATCATAGTTTCTCCTTTCCCTGGAAATTTTTATTTGGGTCCTGTCCTGGTGGGAATATGCTATGGTACAAATTGGTCCTTAATGCCAACAATCACTTCTGAGATATTTGGAGTGAAGCACATGGGTACCATTTTCAACACTATTGCTGCAGCTAGTCCACTTGGGTCTTATATACTTTCTGTGAAAGTTGTTGGATATATATATGACAAGGAAGCCAGTAAAGATAAATCATGCTTCGGCATCCACTGTTTCATGTTGTCGTTTCTGATCCTGGCCGGTGTGTCTTTTCTAGCATTTTTGGTCAGTCTGGCGTTGTATTTCCGTACCCGAAGATTCTATAAGCTAGTTGTGCTTAGAAAATTAAAACATTATGCGAGATAA 1620 0.4352 MEWFANRWTGVAAAIWIQSSCGASYTFSIYSPILKSSQGYDQSTLDTVSVFKDIGANFGVLAGLLYSAVTPYGDRSHASKSKWSSLGGPWIVVAAGAVQCFVGFLFIWASVVGFINQPPVPLMCFFAWLAANGQTFLNTTNVVTGLRNFPQYGGTIIGIMKGFLGLSGAILIQLYHAFFDGQPATFLLMLACLPAIISLLFMFLLRIYELQDYDYKKHLDDFSVVTVIIVVYLMFIIVLQNFVSLPYWARVFTFVVLMVLLASPFGIAVKAYSEDSRIFSQGQSIETAAPTVEYQELPREEVQVQDTSGDMLPLEVEMNILQALCTVEFWMLFVTMIAGLGSGLTVINNMSQIGQSFGYSSIQISNMVSLWSMWNFLGRFGGGHVSDYIMHERGWPRPLLLTVTLGITILGHLIIVSPFPGNFYLGPVLVGICYGTNWSLMPTITSEIFGVKHMGTIFNTIAAASPLGSYILSVKVVGYIYDKEASKDKSCFGIHCFMLSFLILAGVSFLAFLVSLALYFRTRRFYKLVVLRKLKHYAR 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00261 539 SUPERFAMILY MFS general substrate transporter 3 209 IPR036259 -
Vifa5g00261 539 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 8 527 - -
Vifa5g00261 539 SUPERFAMILY MFS general substrate transporter 248 524 IPR036259 -
Vifa5g00261 539 Pfam Major Facilitator Superfamily 332 524 IPR011701 GO:0022857|GO:0055085
Vifa5g00261 539 CDD MFS_Mch1p_like 7 511 - -
Vifa5g00261 539 ProSiteProfiles Major facilitator superfamily (MFS) profile. 327 539 IPR020846 GO:0022857
Vifa5g00261 539 Gene3D MFS general substrate transporter like domains 327 535 IPR036259 -
Vifa5g00261 539 Pfam Nodulin-like 89 268 IPR010658 -
Vifa5g00261 539 Pfam Nodulin-like 7 68 IPR010658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00261 Vifa-Chr5 37504589 37506538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00261 1 536 Nodulin-like Gene Family AT1G74780 54.228 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00261 - - gmx:100775628 852.432