Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00260 ATGGCAACAGTTCCAGGACCTCTTGTTTGGGAGATCGTGAAGAGGAACAACTCTTTCTTGGTTAAGGAGTTTGGTAACAACACTCAGAGTGTTCAGTTTAGCAGAGAGCCGAACAATCTCTACAACCTCAACTCCTACAAGTACTCTGGTTTGGCCAATAAGAAGACTGTTACTATTCAGCCAGCTGGTAAAGATCAGTCTGTGTTGTTGGCCACCACCAAGCCAAGGAAGCAGAACAAGCCTTCTGCTTTGCTTCACAAATCTGTGATGAAGAAGGAGTTCAGAAGGATGGCAAAGGCTGTCCTAAACCAGGTTGCAGATAACTACTACAGACCTGATCTCAAGAAGGCTGCTCTTGCAAGGTTGAGCGTTGTTAACAGAAGCCTCAAAGTTGCAAAGTCTGGTGCAAAGAAGAGGAACAGACATGCTTGA 432 0.4537 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPNNLYNLNSYKYSGLANKKTVTIQPAGKDQSVLLATTKPRKQNKPSALLHKSVMKKEFRRMAKAVLNQVADNYYRPDLKKAALARLSVVNRSLKVAKSGAKKRNRHA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00260 143 PANTHER 60S RIBOSOMAL PROTEIN L28 1 142 IPR002672 GO:0003735|GO:0005840|GO:0006412
Vifa5g00260 143 FunFam 60S ribosomal protein L28 5 133 - -
Vifa5g00260 143 Gene3D - 7 133 - -
Vifa5g00260 143 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00260 Vifa-Chr5 37113076 37114952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00260 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 70.629 7.29e-73 213
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01391 4 416045900 416047196 Vifa5g00260 5 37113076 37114952 ECH
Vifa5g00260 5 37113076 37114952 Vifa5g00260 5 37113076 37114952 ECH
Vifa5g00260 5 37113076 37114952 Vifa4g01391 4 416045900 416047196 PCT