Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00258 ATGTTAAGTAGGATGTCCTATGAAGGCTTGGATGACCAGAGGATGCATTTAGTTTTGAGGATGAAGGAAATTGCTCATGGGATTGTTGATAAGCAACCTAGAGTTGCAATAATTATGTCTGAGATACTTGTGGACCAAGTTTGCTTTGTGGATGAAGGGGCGAGAGACAGTCCTGTGGTTGACTCGATCAAGATCAGCAATGGGGATATTCTTATTGATGAGGCACAAAGCACGATGCATGAAGATGAGATGTTGGACGTGGGTCAGGTTTTAGGATTTGAAAATGGGATAGATGAAGTAGAAGAGTCTCTGCTGTCATCCTGCTTTCAGCAATTTCTTTTGTGGCCTTCCGATGATTGTGTCACCTTTGAGTGGGTTCAGAACATGATGTTCATCCTTGAGAAGGCTTCACAGAAGACATTGCCAACTGAGTTATGTCATGTTGTGCAGACCTTTGTGGTGTTCAAATTGATAGATGCTGCCTGTAATGTTTTACGTAAAGAACCAAACTGTGTGGAGATTAATTGTCTTGGAGAGGATTCAAGAGTCATTGTTGTAGGCGATATACACGGGCAGTTTCATGATTTAATGTTTCTTTTGAAGCATTTAGGAATGCCTTCTGAGAACCAGTTTTATGTTTTCAATGGTAATTATGTTGATGAAGGAGCTTGGGGCATTGAGGTGTTCTTGGTCTTGCTAGCTTGGAAGGTCTTGATGCCTCAGAGAGTGTATCTACTCCGTGGAAATCATGAATCAAGATATTGCACTGAACAATATGGTTTTAAGGAGGAGGTACAGACCAAATATGGTAATCAAAGTGAAGATGTGTACAATAAATTTCTGGAGTGTTTCAAGGAACTTCCATTAGCATCAGTTATTGCCAACCGTGTTTATACTACTCATGGGGGGCTTTTTCGTAGCATTCACGCTGCTGCTTCCGCTTCAGTAAATCAAAAACAGAAAATGACACAAAGGGTGGACCTTGGTTCTTTAGCTGATTTATCTCAAGTTAAAAGAACTTGCATAGATTCTCCACTTGAGGGTCCTAACATATTATTGAGTGACATTCTCTGGTCAAAACCATTTAATAGAGATGGTCTGAGGGTTAATGCAGGTCGGAAATTAGGTTTATGGTGCGGTCCTGATTGCACCGAGGCTTTCTTAAAGCAGCACAATTTGAAGCTGATCATCAGATCACATGAAGGACCTGATGCAAGGGCTGGTAGGGATGACTTTGGTGATATGTTGAATGGATACAGCATAGATCATGATGGCGAGTCAGGAAAGCTATATACACTTTTTAGTGCTCCAGACTACCCGCAGTTTGGGGAAAAAAGATATAACAATGAAGGAGCATATGCAATATTGAAGTGGCCTGATTTTGCAACTCCTTCCTTTCAGTCATTCAAATCAGCAGAAAGACCAATGGTGTATCCTTATCTTGATTTTGATGCTGATGACACGGACTTGAGTAAACTAGACTCTTCTCAAATCGACATAGAGGCCTCAACCTCCACCTTCTCTAGTCCTCAAGATGCATCGAGACCCGAATTTGACTTTGAGTCATTAAGCATATATAATGCTCCAAGTTGGAGTGTCCAGCTTCCGGATGGTTCAGGCGGTTCCCAAGTTGTGCAGGTTCCAAGAGCTCCTTTGGTGGAAGGGCTGCCTCTCCCACCTAACATAGAGGAGCCTCACGCGGCTGCTTATAAGTATTTGTTCGAGCTTGTTGCTGGCCTGAAACACATGATTGCAACAAGGGAGACGGAGAACAATGCTCGTGTATCGGCTTTGCGAAGTAAAGCTAGGAAACGTAAGGAAAGAGGTCACAATTGA 1836 0.4237 MLSRMSYEGLDDQRMHLVLRMKEIAHGIVDKQPRVAIIMSEILVDQVCFVDEGARDSPVVDSIKISNGDILIDEAQSTMHEDEMLDVGQVLGFENGIDEVEESLLSSCFQQFLLWPSDDCVTFEWVQNMMFILEKASQKTLPTELCHVVQTFVVFKLIDAACNVLRKEPNCVEINCLGEDSRVIVVGDIHGQFHDLMFLLKHLGMPSENQFYVFNGNYVDEGAWGIEVFLVLLAWKVLMPQRVYLLRGNHESRYCTEQYGFKEEVQTKYGNQSEDVYNKFLECFKELPLASVIANRVYTTHGGLFRSIHAAASASVNQKQKMTQRVDLGSLADLSQVKRTCIDSPLEGPNILLSDILWSKPFNRDGLRVNAGRKLGLWCGPDCTEAFLKQHNLKLIIRSHEGPDARAGRDDFGDMLNGYSIDHDGESGKLYTLFSAPDYPQFGEKRYNNEGAYAILKWPDFATPSFQSFKSAERPMVYPYLDFDADDTDLSKLDSSQIDIEASTSTFSSPQDASRPEFDFESLSIYNAPSWSVQLPDGSGGSQVVQVPRAPLVEGLPLPPNIEEPHAAAYKYLFELVAGLKHMIATRETENNARVSALRSKARKRKERGHN 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00258 611 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 80 594 - -
Vifa5g00258 611 SMART pp2a_7 149 473 IPR006186 GO:0016787
Vifa5g00258 611 PRINTS Serine/threonine phosphatase family signature 245 269 IPR006186 GO:0016787
Vifa5g00258 611 PRINTS Serine/threonine phosphatase family signature 182 209 IPR006186 GO:0016787
Vifa5g00258 611 PRINTS Serine/threonine phosphatase family signature 429 445 IPR006186 GO:0016787
Vifa5g00258 611 PRINTS Serine/threonine phosphatase family signature 212 239 IPR006186 GO:0016787
Vifa5g00258 611 PRINTS Serine/threonine phosphatase family signature 282 308 IPR006186 GO:0016787
Vifa5g00258 611 Pfam Calcineurin-like phosphoesterase 182 403 IPR004843 GO:0016787
Vifa5g00258 611 SUPERFAMILY Metallo-dependent phosphatases 147 480 IPR029052 -
Vifa5g00258 611 Gene3D - 127 488 IPR029052 -
Vifa5g00258 611 ProSitePatterns Serine/threonine specific protein phosphatases signature. 246 251 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00258 Vifa-Chr5 37068902 37073449 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00258 113 395 Calmodulin-binding Proteins AT5G63870 50.000 1.42e-95 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00258 K04460 - gmx:100779241 856.67