Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00255 ATGGAAAATCTTAGTTGGGATGATGATGACTCACAACTTGTTGCCAACATACCAATCTTGTGGAACACTCAACCACAAGATCTTGCAAGAGACTATTCAATATCAAATCCAAGTTCAACTTTTCTTAGTTATCAAATGCAAGAGATGCAGAAGGTTCAATCAGGAGGTGGAATCAGTTGGGAGGAAAGTTTAATATTCCAATCATACCCTTCACTTTCAGTCAATATCCACTCACCTAACAATTATGTGCCAGATTTCAACATGGTCCACCAACAAAACAGCAAGAGTACTACAACCTGCTCTCTTGAATCATCACTTGATTGTTTGCTTTCAGCCACTACTAATAGTAACACCGACGCGAATTCTGTTCAAGATGATGGAATTTCCATGATTTTTTCTGATTGCAAAAACAGAAACTTATGCAACTTTAACGCAGTTTCTTCTGGTGAATCTGAGAGTGCTAATGCATCATCCATTAGTGCTAGAAACAAAGACATGCAGTATTCATTCAAGGAACTAGATGAAACACTATCACAAACTTCATCGGATCATCAAGGTAAAATCATTGAAAATTCCAAGGTTTATTCGACAAAAAGGACTAATATCGATCACTATGATCCTTACTTCAGTATTACTACTCAGAATTCTTCTTCTTCTGCCACTATTGAATTTGGTTTCAAGCTTATCTCAGAGAAACCACCAAAATCCAAGAAACCAAGATGGGATGATGATAATAACAAGTGTCCCGGTTCATCAAATATCAATTTCCAGCAACCAAATTCATCGCTTTCATTGTCGAATTCATCCATTCATGAAGAGCCTGATCCAGAAGCTATAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCATTTAGGCCAGTGATGAATTTGGGTCTGGAAGTGATGGAAAAGCCAAAGAGAAAGAATGTTAAGATATCAAATGATCCACAAACTGTGGCTGCAAGACAAAGAAGGGAGAGAATCAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTTCCTGGTGGAACCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAATTACCTCAAGTTTCTTAGATCACAAGTCAAAGCATTAGAGAATCTTGGAAACAAGATTGATACAATGAATAATTGTCCTCCTTCAAGCATACCCTTCTCCTTTAACCCTTCAATTCCCATGCAAAACCCTAATGACCACATCCAATATTCCTAA 1224 0.3783 MENLSWDDDDSQLVANIPILWNTQPQDLARDYSISNPSSTFLSYQMQEMQKVQSGGGISWEESLIFQSYPSLSVNIHSPNNYVPDFNMVHQQNSKSTTTCSLESSLDCLLSATTNSNTDANSVQDDGISMIFSDCKNRNLCNFNAVSSGESESANASSISARNKDMQYSFKELDETLSQTSSDHQGKIIENSKVYSTKRTNIDHYDPYFSITTQNSSSSATIEFGFKLISEKPPKSKKPRWDDDNNKCPGSSNINFQQPNSSLSLSNSSIHEEPDPEAIAQMKEMIYRAAAFRPVMNLGLEVMEKPKRKNVKISNDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRSQVKALENLGNKIDTMNNCPPSSIPFSFNPSIPMQNPNDHIQYS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00255 407 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 319 373 IPR036638 GO:0046983
Vifa5g00255 407 FunFam BHLH transcription factor 316 380 - -
Vifa5g00255 407 SMART finulus 319 368 IPR011598 GO:0046983
Vifa5g00255 407 MobiDBLite consensus disorder prediction 246 271 - -
Vifa5g00255 407 Gene3D - 318 381 IPR036638 GO:0046983
Vifa5g00255 407 MobiDBLite consensus disorder prediction 231 273 - -
Vifa5g00255 407 Pfam Helix-loop-helix DNA-binding domain 323 362 IPR011598 GO:0046983
Vifa5g00255 407 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 362 IPR011598 GO:0046983
Vifa5g00255 407 Coils Coil 352 372 - -
Vifa5g00255 407 MobiDBLite consensus disorder prediction 231 245 - -
Vifa5g00255 407 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 114 403 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00255 Vifa-Chr5 35114380 35115603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00255 89 401 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 52.484 8.22e-83 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa5g00255 HLH 5.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00255 - - gmx:100778004 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00255 5 35114380 35115603 Vifa5g00255 5 35114380 35115603 ECH
Vifa5g00255 5 35114380 35115603 Vifa4g01399 4 417146074 417147465 PCT