Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00241 ATGGCTGCTGTCATGATTCAATCCATTTTCAGAGGCTATTTGGCGCGAAAAGCTCATCGAGCACTAAGAGGATTGGTTAAGATACAAGCTCTTGTAAGAGGATTCCTAGTTAGAAAAAGAGTTGTTGCAACACTTCACAGTATTCAAGCTCTTATGAGAGCTCAAGCTGTTGTCCGGTCTAGACGAGCCCGTAGATCCTTTGATAAGGAGAATGCGCACCCAACGCAACATATCCGTGGTCGAAAACATGTGCAATTGAGTGATAAATGGCTTCCCAATTCTGCCTCAAGTAGATTTGATCCAAACCGGGAGATTGTCGCGATTGATCCTCACAGGTCTAGTTCAAGATCTTCAATGTCTGAATATAGAGACGATACGCATCATCATTACTATGAAACAGCATCATCATCTCTTCTTAGTCATCTTTCGCGTAGAGTTTCAGTTCACGAATGCCAACATTCTCATGATTTTGATTCGTGCTGCAATAATGTTAGCGATGAACATAAAATCTTCCCGGCTGATAGCATTTCTCGATTATCAAACTCTTCCCAAGCGAATACTCCGTTGGCGAAGAATGTTTCTGAAGATTCCGGCTTGTTCTTGCCTTACTCTAATTGTCCTAACTACATGGCTAATACTCATTCATCCAAGGCAAGAGTGGTAAGGTCTCGCAGCGCGCCAAAGCAAAGATCTGAGCTCAACAAACGGGTTCCACTTGAGGAAATAATGGCCACAAGAAATAGCATAAGTTATGTTAAAATGCATTGGTAA 771 0.4215 MAAVMIQSIFRGYLARKAHRALRGLVKIQALVRGFLVRKRVVATLHSIQALMRAQAVVRSRRARRSFDKENAHPTQHIRGRKHVQLSDKWLPNSASSRFDPNREIVAIDPHRSSSRSSMSEYRDDTHHHYYETASSSLLSHLSRRVSVHECQHSHDFDSCCNNVSDEHKIFPADSISRLSNSSQANTPLAKNVSEDSGLFLPYSNCPNYMANTHSSKARVVRSRSAPKQRSELNKRVPLEEIMATRNSISYVKMHW 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00241 256 PANTHER IQ-DOMAIN 5-RELATED 2 235 - -
Vifa5g00241 256 ProSiteProfiles IQ motif profile. 49 76 IPR000048 GO:0005515
Vifa5g00241 256 SMART iq_5 21 42 IPR000048 GO:0005515
Vifa5g00241 256 SMART iq_5 1 20 IPR000048 GO:0005515
Vifa5g00241 256 Pfam IQ calmodulin-binding motif 26 40 IPR000048 GO:0005515
Vifa5g00241 256 Pfam IQ calmodulin-binding motif 2 20 IPR000048 GO:0005515
Vifa5g00241 256 Pfam Protein of unknown function (DUF4005) 178 250 IPR025064 -
Vifa5g00241 256 ProSiteProfiles IQ motif profile. 1 27 IPR000048 GO:0005515
Vifa5g00241 256 Gene3D - 24 74 - -
Vifa5g00241 256 ProSiteProfiles IQ motif profile. 23 50 IPR000048 GO:0005515
Vifa5g00241 256 MobiDBLite consensus disorder prediction 64 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00241 Vifa-Chr5 34344942 34345968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00241 2 254 IQD Protein Family AT3G16490 39.033 1.42e-36 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00241 - - gmx:100797296 197.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00241 5 34344942 34345968 Vifa5g00241 5 34344942 34345968 ECH
Vifa5g00241 5 34344942 34345968 Vifa4g01420 4 421036894 421039033 PCT