Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00240 ATGAATGAAATGCCAAGAAATGAAAGAGAATCTTCCGAGGAAAGAAAGCTAGAACTAAGGCTTGCTCCACCTGGTGTTGAAAACTGGTTTCACACCAACAACAAACAAAGAGATCTTGATTTTGATCATGACTCTAAACTCTCTCTTGGTACTAGTAATTACTTTCCAACAAACAATACATCATCATTTCTTCACTTTCCATCAAACCAACAACATGTGATGAGAGCCAAAGAATCTTCATCATCACAACCCTCTTGTCCTAAGCTAGTAGACTTACACAATGGTGATAATAACAAAGTTACAGCTGTTTCCAACACTTCTCAGAAAAGAACTGCTCCTGGACCAGTAGTAGGTTGGCCACCTATACGTTCATTCAGGAAGAATCTTGCAACAAGCAGTGTTTCTAAACCAACATCACAAACTGATTCTCAGACTCAACATCATAACAAGGTTGTTGCTGGTAAAAAACCTGTTGATAACAACTATGGTAGTAAAGGTTTGTTTGTTAAAATCAACATGGATGGTGTTCCTATTGGTAGAAAAGTTGATCTCAAAGCTTATCATAGTTATGAAAATCTCTCCATAGCTGTGGATGAACTCTTCAGAGGACTCCTTAAAGCTCAAGGAGATTGTTCTGGTTGTGGAAGTAAGAAAAGTAATGAAGATGAAGAAAAAGTGATTATTGGAATATTGGATGGAAGTGGAGAATATACTCTTGTATATGAGGATAATGAAGGAGACAGGATGCTTGTTGGTGATGTCCCATGGCATATGTTTGTATCAACAGTGAAGAGGCTTCGAGTGTTGAAGAGTACAGAGCTTTCTGCATTTACACTTGGGACTAAGCAAGAGAAGACATGTACTTGA 867 0.3795 MNEMPRNERESSEERKLELRLAPPGVENWFHTNNKQRDLDFDHDSKLSLGTSNYFPTNNTSSFLHFPSNQQHVMRAKESSSSQPSCPKLVDLHNGDNNKVTAVSNTSQKRTAPGPVVGWPPIRSFRKNLATSSVSKPTSQTDSQTQHHNKVVAGKKPVDNNYGSKGLFVKINMDGVPIGRKVDLKAYHSYENLSIAVDELFRGLLKAQGDCSGCGSKKSNEDEEKVIIGILDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTELSAFTLGTKQEKTCT 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00240 288 ProSiteProfiles PB1 domain profile. 166 271 IPR000270 GO:0005515
Vifa5g00240 288 MobiDBLite consensus disorder prediction 130 150 - -
Vifa5g00240 288 SUPERFAMILY CAD & PB1 domains 161 268 - -
Vifa5g00240 288 MobiDBLite consensus disorder prediction 130 156 - -
Vifa5g00240 288 FunFam Auxin-responsive protein 161 283 - -
Vifa5g00240 288 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 274 IPR003311 GO:0005634|GO:0006355
Vifa5g00240 288 Gene3D - 161 283 - -
Vifa5g00240 288 Pfam AUX/IAA family 17 275 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00240 Vifa-Chr5 33448614 33450343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00240 170 282 B3 DNA Binding Superfamily AT4G23980 32.743 1.55e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vifa5g00240 AUX_IAA 6.2e-69 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00240 K14484 - gmx:100799244 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00240 5 33448614 33450343 Vifa5g00240 5 33448614 33450343 ECH