Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00234 ATGACTCGGCGGTGCTCTCACTGCAGCAACAACGGTCATAACTCTCGAACATGTCCGTCGAGAGGCGGTGGCGGAAGCGGCAGCGGCGGCGGCGGCGGGGTCAGGCTTTTTGGTGTTAGATTGACGGATGGATCGATTATTAAAAAGAGTGCGAGTATGGGGAACCTGACGCTCGCGAATCATCATCATTGTTCTTCTCCTTCGTCTGTTAACCCCGGTTCGATTGTTAATCCCGGTTCACCGTGTTCTGACCCGCCGAATGAACCGGAAGGTTATTTGTCTGATGACCCCGCCAATGTTTCCAGCTTCGCTATCCGCCGCAGCGACAGAAAAAAAGGTGTTCCATGGACTGAAGAAGAACATCGGATGTTTTTGGTTGGACTCCATAAACTAGGCAAAGGAGACTGGCGCGGGATAGCACGTAATTATGTTGTGTCAAGGACCCCTACTCAAGTAGCAAGTCATGCACAGAAGTACTTCATCCGTCAGAGTAATGCTACTAGGAGAAAGAGACGTTCGAGCCTTTTCGACATGGCTCCGGACATGTGTCCAGATTCAACTTCTATGCCAGAGGAACAAGTACTACTTCCACCTTCTGAAAACTCACAACCTAGTAATGGAAAATCACAACCCTCACTAAATCTCTCTCTCAAGACAGAATATGAACCAATGGAAACCACACCGGAAGAAAAATCTCCCTTTGAAGTATCCACCGGTAGAGACACATCTCATCATAGTCATCATCAGGTTCTTAAGCCTATACCGGTCATTCCTAAGGAACCCGTCAATGTTGATGAACTCGTGGGGATGTCTCACTTGAGCATTGGGGAAACACAGGTGCGTGATAGAGAGCCTTCCCCTCTTTCCTTGAAGTTGTTAGGAGAACCCTCAAGACAATCAGCATTCCACACAAATACTCCAGTTGGTGGCTCTGATCTAAACAGTGGCAAAAACAACGCCATTCAAGCGGTTTGA 975 0.4831 MTRRCSHCSNNGHNSRTCPSRGGGGSGSGGGGGVRLFGVRLTDGSIIKKSASMGNLTLANHHHCSSPSSVNPGSIVNPGSPCSDPPNEPEGYLSDDPANVSSFAIRRSDRKKGVPWTEEEHRMFLVGLHKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMAPDMCPDSTSMPEEQVLLPPSENSQPSNGKSQPSLNLSLKTEYEPMETTPEEKSPFEVSTGRDTSHHSHHQVLKPIPVIPKEPVNVDELVGMSHLSIGETQVRDREPSPLSLKLLGEPSRQSAFHTNTPVGGSDLNSGKNNAIQAV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00234 324 MobiDBLite consensus disorder prediction 275 324 - -
Vifa5g00234 324 MobiDBLite consensus disorder prediction 1 22 - -
Vifa5g00234 324 ProSiteProfiles Myb-like domain profile. 108 160 IPR001005 -
Vifa5g00234 324 SMART sant 112 162 IPR001005 -
Vifa5g00234 324 Gene3D - 114 165 - -
Vifa5g00234 324 MobiDBLite consensus disorder prediction 62 81 - -
Vifa5g00234 324 NCBIfam myb-like DNA-binding domain, SHAQKYF class 111 163 IPR006447 GO:0003677
Vifa5g00234 324 MobiDBLite consensus disorder prediction 223 248 - -
Vifa5g00234 324 MobiDBLite consensus disorder prediction 62 98 - -
Vifa5g00234 324 Pfam Myb-like DNA-binding domain 115 160 IPR001005 -
Vifa5g00234 324 CDD SANT 115 160 IPR001005 -
Vifa5g00234 324 PANTHER TRANSCRIPTION FACTOR KUA1 3 259 - -
Vifa5g00234 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 164 IPR017930 -
Vifa5g00234 324 ProSiteProfiles SANT domain profile. 116 164 IPR017884 -
Vifa5g00234 324 MobiDBLite consensus disorder prediction 164 257 - -
Vifa5g00234 324 FunFam transcription factor MYB1R1 114 165 - -
Vifa5g00234 324 MobiDBLite consensus disorder prediction 298 324 - -
Vifa5g00234 324 MobiDBLite consensus disorder prediction 1 30 - -
Vifa5g00234 324 MobiDBLite consensus disorder prediction 192 221 - -
Vifa5g00234 324 SUPERFAMILY Homeodomain-like 110 165 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00234 Vifa-Chr5 31936896 31939538 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa5g00234 Myb_DNA-binding 2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00234 - - gmx:778036 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00234 5 31936896 31939538 Vifa5g00234 5 31936896 31939538 ECH