Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00220 ATGTCTTGCAAGGATAAAGGTGGGTTGGATAATGGAAAATACGTTCGTTATACGCCCGAACAAGTTGAAGCTCTTGAAAGGCTTTATCATGATTGTCCTAAACCTAGCAGCATTCGTCGCCAACAGCTTATTCGTGAGTGTCCTATTCTCTCTCACATTGAGCCTAAACAGATCAAAGTTTGGTTTCAAAATAGAAGATGTAGGGAGAAGCAGAGAAAAGAGGCTTCACGATTGCAAGCTGTTAATAGGAAGTTGAGTGCTATGAATAAGCTGCTTATGGAAGAGAATGATAGGTTGCAGAAACAAGTGTCTCATTTGGTGTATGAAAATGGCTACTTTCGCCAACATACCCAAAATACTACACTTGCAACCAAAGATACGAGTTGTGAATCGGCGGTGACTAGTGGTCAACGCAGTTTGACAGCCCAGCATCCTCCAAGGGATGCAAGTCCTGCAGGGCTTTTGTCCATTGCAGAGGAAACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGAATCTATTGGAATCGTTGCCATTTCTCATGGTTGCCCTGGTGTGGCAGCTAGAGCATGTGGCCTAGTGGGTCTAGAACCTACAAGGGTTGCAGAAATCCTTAAAGATCGGCCCTCGTGGTATCGGGATTGCCGAGCTGTGGATATTCTGAATGTGCTCCCCACGGCAAATGGTGGAACTATTGAGCTGCTTTACATGCAGCTATATGCGCCAACCACATTGGCTCCTGCACGGGACTTGTGGTTGCTGCGCTACACATCTGTTTTAGAAGATGGAAGCCTAGTGATATGCGAGAGGTCTCTTAAAAACACACAGAATGGTCCAAGTATGCCTTCTGTGCAGCATTTTGTTAGAGCTGAGATGCTGCCCAGTGGGTACCTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATTCACATTGTTGATCACATGGATTTGGAGCCATGGAGTGTTCCCGAGGTACTGCGTCCACTGTATGAATCATCTACAATGCTGGCTCAGAAGACAACAATGGTGGCCCTACGTCACCTAAGGCAGATTTCGCATGAAGTTTCCCAGTCTAATGTCACTGGGTGGGGTAGACGTCCGGCAGCCCTTCGAGCACTTGGCCAAAGACTGAGCAGGGGTTTCAATGAGGCACTCAATGGGTTTACAGATGAGGGATGGTCAATGATTGGCAATGATGGTGTTGATGATGTTACAATTCTAGTGAATTCATCTCCTGACAAATTAATGGGTCTGAATCTTTCATTTGCCAATGGATTTCCATCTGTCAGTAATGCAGTTTTATGTGCTAAAGCTTCAATGCTATTACAAAATGTGTCCCCGGCTATTCTACTGAGGTTTTTACGGGAACATAGATCAGAATGGGCAGACAACAACATGGATGCTTACTCAACTGCTGCCATCAAAGTTGGTCCTTGTAGTTTCTCAGGATCTCGAGTCGGAAATTATGGGGGCCAAGTAATTCTTCCACTAGCCCACACTATTGAGCACGAGGAGTTTCTGGAAGTTATTAAACTGGAAGGAATGACTCATTCTCCTGAAGACACAATAATGCCTAGAGAAGTGTTTCTTTTACAAATCTGCAGTGGAATGGATGAGAATGCCGTTGGTACCTGTGCTGAACTTATATTTGCTCCCATTGATGCAACTTTTGCTGATGATGCCCCACTTCTGCCTTCTGGATTTCGCATCATTCCTCTTGATTCTGGAAAGGAGGCTACCAACCCCAATCGCACCCTTGACCTGGCATCTGCCCTTGACATTGGCCCTGCTGGAAACAAAACTTCAAATGATTATTCTGGAAATTCTGGCTGTATGAGATCAGTGATGACAATAGCATTTGAATTTGCTTTTGAAAGTCATATGCAAGATCATGTAGCATCTATGGCACGGCAATATGTTCGCAGCATTATATCATCTGTCCAAAGGGTAGCATTAGCACTTTCACCTTCTCATTTGAGCTCGCAAACTGGGCTCAGGACACCACTGGGTACTCCTGAAGCTCAAACACTTGCTTGTTGGATCTCCAACAGTTATAGGTGCTTCTTGGGTGCTGAGCTGCTTCAATCTAATAATGAGGGGAGCAAATCTTTACTCAAGTCCTTGTGGCATCACTCTGATGCAATACTATGCTGTACTCTAAAGGCGTTGCCCGTGTTTACTTTTGCAAACCAGGCCGGACTTGACATGCTGGAGACTACCTTAGTTGCTCTACAGGATATAACATTGGAGAAAATATTTGATGACCATGGCCGAAAGATTCTGTGCTCGGAGTTTCCTCAAATTATTCAGCAGGGTTTTGGATGCCTTCAAGGTGGTCTATGTCTCTCAAGCATGGGCAGACCTATTTCATATGAAAGAGTAGTAGCATGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTGTGAACTGGTCTTTTGTTTGA 2505 0.4479 MSCKDKGGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYFRQHTQNTTLATKDTSCESAVTSGQRSLTAQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPESIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDRPSWYRDCRAVDILNVLPTANGGTIELLYMQLYAPTTLAPARDLWLLRYTSVLEDGSLVICERSLKNTQNGPSMPSVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTMLAQKTTMVALRHLRQISHEVSQSNVTGWGRRPAALRALGQRLSRGFNEALNGFTDEGWSMIGNDGVDDVTILVNSSPDKLMGLNLSFANGFPSVSNAVLCAKASMLLQNVSPAILLRFLREHRSEWADNNMDAYSTAAIKVGPCSFSGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGMTHSPEDTIMPREVFLLQICSGMDENAVGTCAELIFAPIDATFADDAPLLPSGFRIIPLDSGKEATNPNRTLDLASALDIGPAGNKTSNDYSGNSGCMRSVMTIAFEFAFESHMQDHVASMARQYVRSIISSVQRVALALSPSHLSSQTGLRTPLGTPEAQTLACWISNSYRCFLGAELLQSNNEGSKSLLKSLWHHSDAILCCTLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKILCSEFPQIIQQGFGCLQGGLCLSSMGRPISYERVVAWKVLNEEENAHCICFMFVNWSFV 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00220 834 FunFam Homeobox-leucine zipper protein REVOLUTA 13 68 - -
Vifa5g00220 834 Coils Coil 68 102 - -
Vifa5g00220 834 ProSiteProfiles 'Homeobox' domain profile. 8 72 IPR001356 GO:0003677
Vifa5g00220 834 SMART HOX_1 10 76 IPR001356 GO:0003677
Vifa5g00220 834 SMART START_1 156 366 IPR002913 GO:0008289
Vifa5g00220 834 ProSiteProfiles START domain profile. 147 348 IPR002913 GO:0008289
Vifa5g00220 834 FunFam homeobox-leucine zipper protein ATHB-15 192 373 - -
Vifa5g00220 834 Gene3D - 191 375 IPR023393 -
Vifa5g00220 834 Gene3D - 7 79 - -
Vifa5g00220 834 Pfam START domain 157 365 IPR002913 GO:0008289
Vifa5g00220 834 Pfam MEKHLA domain 691 833 IPR013978 -
Vifa5g00220 834 SUPERFAMILY Bet v1-like 156 365 - -
Vifa5g00220 834 SUPERFAMILY Homeodomain-like 12 76 IPR009057 -
Vifa5g00220 834 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 9 834 IPR044830 GO:0003700
Vifa5g00220 834 CDD homeodomain 13 73 IPR001356 GO:0003677
Vifa5g00220 834 Pfam Homeodomain 13 71 IPR001356 GO:0003677
Vifa5g00220 834 CDD bZIP 65 104 - -
Vifa5g00220 834 CDD START_ArGLABRA2_like 151 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00220 Vifa-Chr5 29757849 29765214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00220 1 786 Homeobox Transcription Factor Family AT1G52150 84.177 0.0 1385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa5g00220 START 1.3e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00220 K09338 - zju:107428556 1546.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00220 5 29757849 29765214 Vifa5g00220 5 29757849 29765214 ECH
Vifa5g00220 5 29757849 29765214 Vifa4g01442 4 425208268 425215016 PCT