Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00204 ATGGAAGAAAAAGTTTGGTACAAAACGACCAAAGAAGGTTGTTTTATGCATTATATCAATCTCACCATAACTTCACTTTCTTCTATCATAGCAATAATTCAAACTTGTGTTTTCAATATCTTCATGTCTACACCATTACAACATGATGATGAGACTTCATCTCTCAACTTCAAGGAGACAGAACTTAGACTAGGCCTACCTGGTTCTCAATCTCCTCACAGAAAACAAGTTGGAGAAGTTCCTCATAACTTCAACAAAAACATTAATGTTTGTTCTTCTTTGAACAACCTTGTATCTAGTGTTGGAGCTAAAAGAGGTTTCTATGACGCTATTAATGAATCTTCATCAAAAAACATCAAAGAGATTCTTCACCAACCACTACATGAAAAGAATAAACATGTTTCTGGAACAAATGAACATGTTAATGCTCTTGCTTCAAAGACACAGGTTGTAGGATGGCCACCGATTCGATCTTTTCGAAAGAACTCGATGGCTTCGAATTTGACAAAGAGCAATGATGAAGATGAAGGAAAATCAGGATTTGGTTGTCTCTATGTAAAAGTGAGTATGGATGGTGCACCTTATCTCAGAAAGATTGATCTCAAAATCTACAATAACTATAAGGATCTTTCTTCAGCTCTTGAGAACATGTTCACATGCTTTACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAAAGCTCCTTGAGGGATCTTTTACATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTCGGCGATGTTCCTTGGCGGATGTTCGCCGACTCGTGTCGGAGACTAAGGATCATGAAAGGTTCTGAGGCAATTGGGTTGGCTCCAAGAGCCATGGAAAAATCTAGGAGCCAAAACTAA 912 0.3805 MEEKVWYKTTKEGCFMHYINLTITSLSSIIAIIQTCVFNIFMSTPLQHDDETSSLNFKETELRLGLPGSQSPHRKQVGEVPHNFNKNINVCSSLNNLVSSVGAKRGFYDAINESSSKNIKEILHQPLHEKNKHVSGTNEHVNALASKTQVVGWPPIRSFRKNSMASNLTKSNDEDEGKSGFGCLYVKVSMDGAPYLRKIDLKIYNNYKDLSSALENMFTCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWRMFADSCRRLRIMKGSEAIGLAPRAMEKSRSQN 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00204 303 Gene3D - 178 297 - -
Vifa5g00204 303 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 54 290 IPR003311 GO:0005634|GO:0006355
Vifa5g00204 303 FunFam Auxin-responsive protein 178 295 - -
Vifa5g00204 303 Pfam AUX/IAA family 59 294 IPR033389 -
Vifa5g00204 303 SUPERFAMILY CAD & PB1 domains 183 284 - -
Vifa5g00204 303 ProSiteProfiles PB1 domain profile. 183 285 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00204 Vifa-Chr5 28854929 28856269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00204 185 297 B3 DNA Binding Superfamily AT1G19850 31.304 3.09e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifa5g00204 AUX_IAA 2.8e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00204 K14484 - gmx:100804423 361.303