Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00202 ATGATGGCTGGAAACCCTAACTGGTGGAACATGCATCCACAATCTTTGAATATCCCTCAATATATGCTTGGATCTTCTTCAATCCCTTTTAATTCCCTGACAGAAAATGCTGAAGTTCCACCTCAATCATGGAGCCAACTTCTTTTTACTGGACTACCTGGAGAAGAAGAGAGGCTTGGTTTTGATCATTTTCAACCTAAAAACACAGAAAACTGGGATGTTCAAATACTGAATCCATCTTCAAGGGTTCCTATTATGGATGTAATAAAGCATGAAGTTTCTCAGAGTGAGAATTTCTATAACCAAGGACATCATGAAGAGTTTCTTACTTCTGGACTTGCTTCATCTTGGTCACACATGGTGCCAGTTTCTTCTCCAACTTCTCATGTCACTACTAGCTTAAGTAGTGATAATATATTGGACTTCACTTATAACAAGCTAGATCATACCAAAAACCAACTACCAGATCAAATATCTGAGTGTAATAGTTCAACTGTTGGAGTTAATAAGAAAGCTAGGGTTCAGCCATCTTCAAGCCAACCACCACTAAAGGTGAGGAAGGAGAAGCTAGGTGATAGAATAACAGCACTTCACCAACTAGTTTCTCCATTTGGAAAGACTGACACAGCTTCTGTATTATTAGAAGCCATTGGATACATCAGATTTCTGCAGAGTCAAATTGAGGCACTAAGCTCTCCTTACTTGGATACTGCAACTTCAAAAAACATGATGAGGAATCAACATTCTGTGCATGTTGAAAGAAATGCTGTGTTTCCTGAGGACCCTGGTCAGCTGTTGGATGACACTGGCCTAAAAAGAAAGGGCGCTCCAATTCCAAACCAGAATGTAGAAGGAAATAAGGCAAAGGACTTGAGGAGTAGAGGGTTGTGTTTGGTTCCTATTTCATGCACACAACATGTTGGAAGTGAAAATGGAGCTGATTATTGGGCACCAGCATTTGGAAGTGGATTTTAA 975 0.399 MMAGNPNWWNMHPQSLNIPQYMLGSSSIPFNSLTENAEVPPQSWSQLLFTGLPGEEERLGFDHFQPKNTENWDVQILNPSSRVPIMDVIKHEVSQSENFYNQGHHEEFLTSGLASSWSHMVPVSSPTSHVTTSLSSDNILDFTYNKLDHTKNQLPDQISECNSSTVGVNKKARVQPSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSSPYLDTATSKNMMRNQHSVHVERNAVFPEDPGQLLDDTGLKRKGAPIPNQNVEGNKAKDLRSRGLCLVPISCTQHVGSENGADYWAPAFGSGF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00202 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Vifa5g00202 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 235 IPR036638 GO:0046983
Vifa5g00202 324 Gene3D - 184 250 IPR036638 GO:0046983
Vifa5g00202 324 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 306 - -
Vifa5g00202 324 FunFam Transcription factor bHLH123 family 184 249 - -
Vifa5g00202 324 CDD bHLH_AtbHLH_like 184 231 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00202 Vifa-Chr5 28017003 28020439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00202 1 265 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 39.640 3.56e-45 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00202 - - gmx:100802121 450.284