Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00197 ATGTGTGCTGCAGACATGTCCAACAACAATCCTCCTCCTGCCAAAGACTTCTTTCCCTCTCCAGCTCTCTCTCTTAGTCTTGCGGGGATTTTCCGCCATGGTGCTGCGGCGGTGGAGGTTGAAGGAGCGACTACTAGCAACATGGAGGTGGAGGAAGGAGAGGAAGGAAGTACTATAGGCGGCGGGGAACGCATGGAGGAAATCAGCAGTGAGTATTCAGGTCCATCAAAATCCAAGTCAGAGGAAGATTTTGAAGGAGATGAACAAGAAGATGATGAAGGTTGTGATGGAGACAATAAGAACAAGAAGAAGAAAAGGAAGAAATATCACCGACACACTGCAGAACAAATCAGATTCATGGAAGCGCTTTTCAAAGAATCGCCACATCCTGATGAAAAACAGAGACAACAACTCAGCAAGCAATTAGGACTTGCTCCAAGACAAGTCAAGTTTTGGTTCCAAAATCGTAGAACTCAAATCAAGGCAATACAAGAGAGACATGAAAATTCATTGTTGAAAACAGAAATAGAGAAACTAAGGGAGAAAAACAAGACCCTAAGAGAGACCATAAACAAAGCTTGTTGCCCTAATTGTGGGGTACCTACCACAAACAGAGATGGTTCCATGCCAACTGAAGAACAACAACTTCGTATTGAAAATGCCAAACTCAAATCCGAGGTAGAGAAACTTCGAGCGGCGTTAGGGAAATATGCACCTGGAACAATGTCACCTTCATGCTCTACTAGTCATGATCAAGAGAATATGAAAAGTTCTTTGGATTTTTACACTGGAATTTTTGGTCTTGATGAGTCAAGGATAATGGATATGGTAAACCAAGCAATGGAAGAGCTTATAAAGATGGCTACAATGGGTGAACCACTGTGGCTACGTAGCTTTGAGACCGGTCGAGAAATACTTAACTATGATGAATATTTGAAGGAGTTTGGAGGTGAAAATTCAGATGATGGTAGAACAAAGAGATCCATTGAAGCTTCAAGAGATACAGGAGTTATTTTTGCAGATATTCATAGGATTGTCCAATGTTTTCTTGATGCTAATCAATGGAAGGAGATGTTTCCATGTTTAATATCTAAAGCTGCAACAGTTGATATTATATGCAAAGGAGAAGTTTCTAACAATGATGGTGTTGCGCAACTGATGTTTGCTGAGCTGCAAATGCTAACACCAATGGTGGCCACTAGAGAAGTGTATTTTGTCAGATATTGCAAACAATTAAGTGGTGAAAAATGGGCAATAGTTGACGTGTCCATAGACAAAGTAGAAGACAACATTGACATGTCCCTCATGAAATGCAGAAAACGTCCATCTGGTTGCATTATTGAAGATAAGTCAAATGGTCATTGCAAAGTAACGTGGGTGGAGCATTTAGAGTGTCAAAGGAGCACAGTTCATTCAATGTTTAGAACCATTGTCAACAGTGGCCTAGCTTTCGGGGCAAGGCATTGGATTGCGACGCTTCAACTTCAATGCGAACGTCTAGTTTTCTTCATGGCAACAAATGTCCCCATGAAAGATTCAACTGGTGTTGCTACATTGGCTGGGAGAAAAAGCATTTTAAAATTGGCACAAAGAATGACATGGAGTTTCTGTCAAGCTATTAGTGCATCAAGCTTCCATACATGGACAAAAGTTACTGGTAAAACTGGAGAAGACATAAGGATTAGTTCTCGAAAGAATTTGAATGATCCCGGTGAATCTCTAGGGTTGATACTTTGCGCAGTTTCTTCTGTATGGTTGCCTGTATATCATAATGTTCTGTTCGATTTCTTGAGGGACGAAGCTCGTCGAACTGAGTGGGATATCATGTCTAGTGGCGGAACAGTGCAGTCTATTGCAAATTTAGCCAAAGGACAAGACAGAGGCAATGCAGTAACAATCCAAACGATTAAATCTAAAGAGAACAATATGTGGATACTGCAAGATAGCTGCACAAACTCTTATGAATCAATGGTGGTGTATGCTCCTGTGGACATTACTGGAATTCAGTCTGTGATGACAGGATGCGATTCGAGCAATCTTGCAATACTGCCGTCGGGATTCTCAATTGTTCCTGATGGCTTAGAGTCAAGGCCAATGGTAATTACTTCGAGGCGGGAGGAGAAAAATACAGAGGGAGGATCTTTGTTTACAATAGCATTCCAGATTCTTACCAATGCTTCTCCTACAGCGAAATTAACAATGGAGTCTGTGGACTCTGTTAACAATCTTGTATCATGTACATTGAGACACATCAGAACGAGTTTACATTGTGAAGATGGTTAG 2283 0.4122 MCAADMSNNNPPPAKDFFPSPALSLSLAGIFRHGAAAVEVEGATTSNMEVEEGEEGSTIGGGERMEEISSEYSGPSKSKSEEDFEGDEQEDDEGCDGDNKNKKKKRKKYHRHTAEQIRFMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTEIEKLREKNKTLRETINKACCPNCGVPTTNRDGSMPTEEQQLRIENAKLKSEVEKLRAALGKYAPGTMSPSCSTSHDQENMKSSLDFYTGIFGLDESRIMDMVNQAMEELIKMATMGEPLWLRSFETGREILNYDEYLKEFGGENSDDGRTKRSIEASRDTGVIFADIHRIVQCFLDANQWKEMFPCLISKAATVDIICKGEVSNNDGVAQLMFAELQMLTPMVATREVYFVRYCKQLSGEKWAIVDVSIDKVEDNIDMSLMKCRKRPSGCIIEDKSNGHCKVTWVEHLECQRSTVHSMFRTIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCQAISASSFHTWTKVTGKTGEDIRISSRKNLNDPGESLGLILCAVSSVWLPVYHNVLFDFLRDEARRTEWDIMSSGGTVQSIANLAKGQDRGNAVTIQTIKSKENNMWILQDSCTNSYESMVVYAPVDITGIQSVMTGCDSSNLAILPSGFSIVPDGLESRPMVITSRREEKNTEGGSLFTIAFQILTNASPTAKLTMESVDSVNNLVSCTLRHIRTSLHCEDG 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00197 760 FunFam Homeobox-leucine zipper protein HDG1 91 179 - -
Vifa5g00197 760 Gene3D - 93 176 - -
Vifa5g00197 760 Coils Coil 162 189 - -
Vifa5g00197 760 ProSiteProfiles 'Homeobox' domain profile. 103 163 IPR001356 GO:0003677
Vifa5g00197 760 SMART HOX_1 105 167 IPR001356 GO:0003677
Vifa5g00197 760 SUPERFAMILY Homeodomain-like 96 164 IPR009057 -
Vifa5g00197 760 ProSiteProfiles START domain profile. 266 502 IPR002913 GO:0008289
Vifa5g00197 760 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 102 755 IPR042160 -
Vifa5g00197 760 MobiDBLite consensus disorder prediction 1 21 - -
Vifa5g00197 760 FunFam Homeobox-leucine zipper protein GLABRA 2 275 498 - -
Vifa5g00197 760 CDD START_ArGLABRA2_like 271 498 - -
Vifa5g00197 760 CDD homeodomain 110 161 IPR001356 GO:0003677
Vifa5g00197 760 Pfam Homeodomain 106 161 IPR001356 GO:0003677
Vifa5g00197 760 Gene3D - 317 494 IPR023393 -
Vifa5g00197 760 MobiDBLite consensus disorder prediction 42 111 - -
Vifa5g00197 760 Pfam START domain 278 499 IPR002913 GO:0008289
Vifa5g00197 760 ProSitePatterns 'Homeobox' domain signature. 138 161 IPR017970 GO:0000981|GO:0006355
Vifa5g00197 760 SUPERFAMILY Bet v1-like 269 499 - -
Vifa5g00197 760 SUPERFAMILY Bet v1-like 528 752 - -
Vifa5g00197 760 SMART START_1 275 499 IPR002913 GO:0008289
Vifa5g00197 760 Coils Coil 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00197 Vifa-Chr5 26941367 26946915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00197 68 759 Homeobox Transcription Factor Family AT1G79840 65.385 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa5g00197 START 2.7e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00197 K09338 - gmx:100809926 1222.99