Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00195 ATGGCTGCAACCTCTCATCAATCCTCTACTACTTCTGAAGAGAACAAAGTTTCGATATTAATGAAGGAGAAGGATATTTCAAACTCCAAAATATCAACCTTCAAGCTCTCGGAGGATGCTTCCATTCGCGGGTCGAATTTGCAAGAACATGATTTTTTCAACCATGCAAAGAATCTGGCGATAGGTTCATCTTCATTAAGTTTGGCTAATAATAAGTCTAACAATGAAGAAAATATTAAGAAAGAGTCTTCAAACAGTTTCTCATGCATCTTTTGTAAAAGAAAATTTTCTACTCCGCAAGCTTTAGGAGGACATCAAAACGCCCATAAAAAAGAGCGTGAACTCGCAAAACATCGCAAAGAGGTAAACAATGATTTTGGAATTCCTTGTTATCCTTTTCCTTACTACACTAATTATCCTAGTCTTTCTACAACTCCTTATCAAGGACTTAGATTTGGACCTTATAATAATAGAGCACTTGGAATTAATAAGGGTTGTATGATTCACAAGCCAAGGCCAAATTATTCATGGATCTCACCTCTTTTTAAGTCATGTTCTACTTCTGTGTGGACACCAAAGCAAGAGATGGTGAGAAACTTTTTTCCTATTGATGAATTGAAGAATGAGAGTCTTAAGGGAAATAATGTCACTCCAACTTTGAGAAATATGCTAAATTTAGAAGATGGTGTTGGAGAGTCTTCTATAAATATTACAGCAAAGTCAAACTCAAACTCAACTGAAGAGGATTCAATTGTAGTTGGCACAAGTGGTGATAATCTTCACACAAACATGAAAGAAGTTTCTGATTCTAAATCTTTAGAGCTTGATTTGTCACTTAAGCTTTAA 846 0.3522 MAATSHQSSTTSEENKVSILMKEKDISNSKISTFKLSEDASIRGSNLQEHDFFNHAKNLAIGSSSLSLANNKSNNEENIKKESSNSFSCIFCKRKFSTPQALGGHQNAHKKERELAKHRKEVNNDFGIPCYPFPYYTNYPSLSTTPYQGLRFGPYNNRALGINKGCMIHKPRPNYSWISPLFKSCSTSVWTPKQEMVRNFFPIDELKNESLKGNNVTPTLRNMLNLEDGVGESSINITAKSNSNSTEEDSIVVGTSGDNLHTNMKEVSDSKSLELDLSLKL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00195 281 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Vifa5g00195 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Vifa5g00195 281 Gene3D Classic Zinc Finger 63 126 - -
Vifa5g00195 281 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 281 IPR044246 GO:0009788
Vifa5g00195 281 SUPERFAMILY beta-beta-alpha zinc fingers 85 114 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00195 Vifa-Chr5 26912938 26913783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00195 87 171 C2H2 Transcription Factor Family AT1G80730 41.758 8.22e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00195 - - psat:127082596 269.24