Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00183 ATGAACGGTGGAGGAAGACAAGGACTTAGATCTAGTGCCACCGGCGTTCACCACCAACGGCAATACTCCGATAACTTCCTCGACGGCGCCTCCACCGGAAACCGATGGCTTCAATCTGCTGGACTTCAACATCTTCAATCCTCCTCCGCCGTGAATCCTCTCCAGGATTATAATTTGTATGGCGGAGGTGGAGCGCAGGGAGGGAGAATGTATAGGAATGGTCAGAGAAGTTTTAATGGAGGAGGGAGTGATTATTATATGGAGCCTGCTTCTCCTCCTGATGCTTATCGCGGTGCGTCGACACTGAAGTTGAGTGGCGAAGATTTGACTGGTGATTTTAGTCCTGGCTTGTTGGATCTGCATTCGTTTGATACTGAGCTTCTTACTGAGATTCCAACCTCCAACGCATATGAGTCCAATTCTCTCTACCGTGGTAGAAGCTTTGATGACTCTGAACCTTACATGAGCAAACAGACTGCCAAGGCTCGTGCTCCTGACAATGCAGTGAAAAGTTTACCGGCCGACAAAGAAAAGTCTAGTTCCGTGGCGAAAATTAAAGTTGTGGTTCGTAAGAGACCATTGAATAAAAAGGAATTAGCGAAGAACGAGGAAGACATTATAGAAACGTATTCCAATTCTATGACAGTGCATGAAACCAAACTGAAGGTTGACTTAACTCAGTACATGGAGAAGCATGAATTTGTTTTTGATGCTGTCTTGAATGAAGAGGTTACAAATGATGAGGTGTACCGTGAAACAGTGGAACCCATAGTACCAATCATCTTCGAACGCACTAAGGCAACTTGCTTTGCTTACGGGCAAACAGGAAGTGGAAAAACCTACACGATGAAGCCACTGCCACTTAAAGCATCAAGGGACATCCTAAGATTGATGCATCATACTTATCGGAACCAAGGATTTCAACTGTTCGTGAGTTTCTTTGAAATATATGGCGGGAAGCTTTATGATCTCCTTAATGATAGAAAAAAGCTTTGCATGAGGGAGGATGGAAAGCAGCAAGTTTGCATTGTTGGTTTGCAAGAGTATCGTGTAGCAGATGTGGAGCACATCAAAGACCTGATTGAGAAAGGAAGTGCCACAAGAAGTACAGGAACCACAGGTGCAAATGAGGAATCTTCTCGCTCCCATGCTATACTTCAACTTGCTATTAAGAGGTCAGTTGATGGCAGCGAATCCAAACCTCCCCGACTTGTTGGCAAGCTCTCCTTCATAGATCTTGCTGGAAGTGAACGTGGAGCAGATACTACTGACAATGATAAACAGACAAGAATAGAAGGGGCTGAAATCAACAAGAGCTTACTCGCCCTAAAGGAGTGCATAAGAGCTCTTGATAATGACCAAGGACACATCCCTTTCAGGGGAAGCAAACTGACTGAAGTTTTGCGGGATTCTTTTGTTGGGAATTCCCGTACTGTTATGATATCATGTATATCACCAAGCTCTGGCTCATGCGAGCACACTCTGAATACATTAAGATATGCTGACAGGGTTAAAAGCCTGTCAAAAGGGAACAACTCAAAGAAGGATGTTTTATCGTCGAATTTCAACCTTAAAGAATCAATTTCAGTTCCCTTATCTTCTGCTACTGCACCGGTCTATGAAGATCATACAGCTGATGCATGGCAAGATGAAAATGAAGGGGATGATTTTAGCCCCCCTGAAGAGTACTATGAGCAGGTGAAACCACCATTGAAGAAAAATGTAAGGATGGAGTCATATGCAATGACAGATGACAGATTGAAGAAACCTAGTGGTCTGGTCAAATGGAAGGACCTCCCAAAAGCTGAACCTAAACCCACTAATTCAGAGGAGGATGAATTGAGTGCCCTCTTACAGGAAGAAGAGGATCTAGTAAATGCTCACCGGACACAAGTAGAGGAGACCATGAATATTGTTAAAGAGGAGATGAACCTCTTGGTTGAAGCGGGTCAACCAGGGAATCAGCTGGACGATTACGTAAAAAGACTTAACACCATTCTATCTCAGAAGGCTGCTGGCATTCTGCAGTTGCAAAACCGTTTAGCTCATTTTCAGAAACGTTTAAAGGAACATAATATTTTGGTTTCATCTTCTGGTTACTAG 2103 0.4375 MNGGGRQGLRSSATGVHHQRQYSDNFLDGASTGNRWLQSAGLQHLQSSSAVNPLQDYNLYGGGGAQGGRMYRNGQRSFNGGGSDYYMEPASPPDAYRGASTLKLSGEDLTGDFSPGLLDLHSFDTELLTEIPTSNAYESNSLYRGRSFDDSEPYMSKQTAKARAPDNAVKSLPADKEKSSSVAKIKVVVRKRPLNKKELAKNEEDIIETYSNSMTVHETKLKVDLTQYMEKHEFVFDAVLNEEVTNDEVYRETVEPIVPIIFERTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYRNQGFQLFVSFFEIYGGKLYDLLNDRKKLCMREDGKQQVCIVGLQEYRVADVEHIKDLIEKGSATRSTGTTGANEESSRSHAILQLAIKRSVDGSESKPPRLVGKLSFIDLAGSERGADTTDNDKQTRIEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGNNSKKDVLSSNFNLKESISVPLSSATAPVYEDHTADAWQDENEGDDFSPPEEYYEQVKPPLKKNVRMESYAMTDDRLKKPSGLVKWKDLPKAEPKPTNSEEDELSALLQEEEDLVNAHRTQVEETMNIVKEEMNLLVEAGQPGNQLDDYVKRLNTILSQKAAGILQLQNRLAHFQKRLKEHNILVSSSGY 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00183 700 FunFam Kinesin-like protein 164 510 - -
Vifa5g00183 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 507 IPR027417 -
Vifa5g00183 700 ProSitePatterns Kinesin motor domain signature. 406 417 IPR019821 GO:0003777|GO:0005524|GO:0007018
Vifa5g00183 700 Coils Coil 674 694 - -
Vifa5g00183 700 MobiDBLite consensus disorder prediction 147 175 - -
Vifa5g00183 700 CDD KISc_KIF2_like 184 505 - -
Vifa5g00183 700 PANTHER KINESIN-RELATED PROTEIN 6 566 695 IPR027640 GO:0003777|GO:0007018
Vifa5g00183 700 Gene3D Kinesin motor domain 159 510 IPR036961 -
Vifa5g00183 700 PRINTS Kinesin heavy chain signature 373 390 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa5g00183 700 PRINTS Kinesin heavy chain signature 457 478 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa5g00183 700 PRINTS Kinesin heavy chain signature 264 285 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa5g00183 700 PRINTS Kinesin heavy chain signature 407 425 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa5g00183 700 Pfam Kinesin motor domain 190 506 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa5g00183 700 SMART kinesin_4 182 513 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa5g00183 700 ProSiteProfiles Kinesin motor domain profile. 184 507 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00183 Vifa-Chr5 26323966 26328480 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00183 184 507 Calmodulin-binding Proteins AT5G65930 34.132 1.62e-44 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00183 K10393 - gmx:100799100 1194.49