Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00182 ATGAAGAACAACGTGGGAAGAGAGTTTGTGGCCGGTGGAATTGGAGGCACGGCGGGTATCGTGGCGAGTTATCCGTTCGACACTCTTCGTGTCATGCAACAACAGTCCGGCAGTGCATCTGCTGTTGGCATCTTTAGAAACTTGTTGGCTAAGGAAGGTCGCTTTGCTCTCTACCGTGGCATGGCTCTTCCTTTGGTTTCTGTTGGTTTTCAGAATGCTATAATTTTTCAAAGTTATACTGTTTTTACGAGGATTTTTAGCCCTTATGGTTCTTCCAATGGACCTCATTCCTTTGTGAATGTTGGTTTAGGAGGATTCGGTGCAGGTGCTCTCCAAAGTATATTGATGTGTCCTATTGAGTTAGTTAAAATTCGCATTCAACTTCAAAAAAATATTGAGAATCTTTCAAAAAACAAAAAGAGCACTCCTTTGATATTGGCTGAGAAGATTTGGAAAAATGAGGGTGTTTGTGGCATTTATCGAGGATTTGGCATCACTGTTCTTAGAGATGCACCTGCTTTGGCCTCCTACTTTGTAGCATATGAGTACACGAGGGAGAAACTCCACCCTGGTTGTAGAGAAAGTTGTCAAGAAAGCGTGCATACTATGTTTATAGCAGGAGGAGTAGCAGGGATTGCGAGTTGGGTTTTTAACTATCCTACAGATGTTATAAAGACTAGATTGCAGGCTCAAACATCATCTTCATTGAAATACAAAGGTATCTTGGATTGTACCTTAAAGATAATCAAAGAAGAAGGTTCAATTGTGTTATGGCGGGGATTAGGAGCAACACTTGTTCGAGCTTTTGTTATGAATAGTGCTATTTTTCCTACTTATCAAATGGCTTTGAGGTGTTTGACCAATAATTAA 870 0.4069 MKNNVGREFVAGGIGGTAGIVASYPFDTLRVMQQQSGSASAVGIFRNLLAKEGRFALYRGMALPLVSVGFQNAIIFQSYTVFTRIFSPYGSSNGPHSFVNVGLGGFGAGALQSILMCPIELVKIRIQLQKNIENLSKNKKSTPLILAEKIWKNEGVCGIYRGFGITVLRDAPALASYFVAYEYTREKLHPGCRESCQESVHTMFIAGGVAGIASWVFNYPTDVIKTRLQAQTSSSLKYKGILDCTLKIIKEEGSIVLWRGLGATLVRAFVMNSAIFPTYQMALRCLTNN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00182 289 ProSiteProfiles Solute carrier (Solcar) repeat profile. 3 85 IPR018108 -
Vifa5g00182 289 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 4 286 - -
Vifa5g00182 289 Gene3D Mitochondrial carrier domain 1 288 IPR023395 -
Vifa5g00182 289 Pfam Mitochondrial carrier protein 96 188 IPR018108 -
Vifa5g00182 289 Pfam Mitochondrial carrier protein 199 288 IPR018108 -
Vifa5g00182 289 Pfam Mitochondrial carrier protein 4 87 IPR018108 -
Vifa5g00182 289 ProSiteProfiles Solute carrier (Solcar) repeat profile. 96 187 IPR018108 -
Vifa5g00182 289 PRINTS Mitochondrial carrier protein signature 8 21 IPR002067 GO:0055085
Vifa5g00182 289 PRINTS Mitochondrial carrier protein signature 21 35 IPR002067 GO:0055085
Vifa5g00182 289 PRINTS Mitochondrial carrier protein signature 207 229 IPR002067 GO:0055085
Vifa5g00182 289 PRINTS Mitochondrial carrier protein signature 160 178 IPR002067 GO:0055085
Vifa5g00182 289 SUPERFAMILY Mitochondrial carrier 4 279 IPR023395 -
Vifa5g00182 289 ProSiteProfiles Solute carrier (Solcar) repeat profile. 198 285 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00182 Vifa-Chr5 26314019 26317463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00182 1 289 Antiporters AT1G79900 54.828 2.13e-98 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00182 K15109 - gmx:100801221 348.206