Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00169 ATGCCTAAGAAGCTTCAGAAAACCCTTCAAGATTACCTCAACAAACTCAAAAACAAAAACCCTCACCCTCAAATCAAGTTAACCAAAATGCTCTCTGGCTGCAAACACCCCAAAACGCCGTCGTTTTCTTTAGAAAACGGCAGAAACTTATCATCTAACGCCGTTAACGACGCTGCAACGCTAGCTGACGTTGACCGTTTTCTCTTCGAGAATTTCAAGTCTCTGTATTTCAAAGACGACGACGAAACCGAAAACTCCGTCAAAAAAATCTCCGACGGAAAAAACAACCGCGAACCACCGAAATTGACTTCCTCCTTGCTTGAATCACCGCGATTCGATCGATCACCACCGCAGAATCTCTCCGGATCAGCGCGATTCTTCGTGAAACCGGGAAACTCAGGATCGTTGATGGAAGATGCTTTATCGCTAACAAACAGCGATGAAGGCGACTCGAGTAATTCCAATTCCTCATCGACAGAATCGCCTTCGAAAGAGGTAGTTATAGTGAATCATGATGATCATAATCAATCTCTTCCTGAAAACTGTATTGCTCTGTTATCGTATTCGCCGAGTCCTTACGACGAATTCAGGCGATCGATGCAGGAATTGGTGGAATCCAAGTACGGTAAAACTGAACTCAATCAAATGAAAATCGATTGGGATTTCATGGAGGAGATGCTGTTTTGTTACCTGAATCTGAATGAGAAAAAGTCTCATAAGTTTATTTTAAGTGCTTTTGTTGATCTCATCACTGTTATGCGTCAGAATTCGGAAGCAGCTCCGGCGAAGCCGTGTAGCGTCAGAACCGTTAGGATTGGTAGGGAAGTCAGGAAGAAGAAGACTAAGCAAGTTACCATTGAATTTGGGTCTTAG 873 0.4341 MPKKLQKTLQDYLNKLKNKNPHPQIKLTKMLSGCKHPKTPSFSLENGRNLSSNAVNDAATLADVDRFLFENFKSLYFKDDDETENSVKKISDGKNNREPPKLTSSLLESPRFDRSPPQNLSGSARFFVKPGNSGSLMEDALSLTNSDEGDSSNSNSSSTESPSKEVVIVNHDDHNQSLPENCIALLSYSPSPYDEFRRSMQELVESKYGKTELNQMKIDWDFMEEMLFCYLNLNEKKSHKFILSAFVDLITVMRQNSEAAPAKPCSVRTVRIGREVRKKKTKQVTIEFGS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00169 290 MobiDBLite consensus disorder prediction 83 163 - -
Vifa5g00169 290 NCBIfam uncharacterized plant-specific domain TIGR01568 183 252 IPR006458 -
Vifa5g00169 290 MobiDBLite consensus disorder prediction 97 128 - -
Vifa5g00169 290 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 60 253 IPR038933 GO:0045892
Vifa5g00169 290 ProSiteProfiles OVATE domain profile. 185 252 IPR006458 -
Vifa5g00169 290 MobiDBLite consensus disorder prediction 137 163 - -
Vifa5g00169 290 Pfam Transcriptional repressor, ovate 189 251 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00169 Vifa-Chr5 22866001 22866873 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vifa5g00169 Ovate 1.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00169 - - lja:Lj3g3v0160750.1 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00169 5 22866001 22866873 Vifa5g00169 5 22866001 22866873 ECH
Vifa5g00169 5 22866001 22866873 Vifa2g05472 2 1629154314 1629155180 PCT