Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00167 ATGAGTGTGGTCGGTTTTGATTTCGGTAACGAGAGCTGCATTGTTGCTGTTGCAAGGCAAAGAGGGATTGATGTTGTGCTTAACGATGAGTCCAAGCGTGAGACTCCTGCTATTGTGTGTTTTGGCGATAAACAGCGGTTTATTGGGACGGCTGGGGCTGCTACCACTATGATGAACCCGAAAAATTCTATCTCGCAGATGAAGAGGTTGATTGGTAAGAAGTTTGCTGATCCGGAAGTGCAGAGTGATTTGAAGTCGTTGCCTTTTGCTGTTACTGAAGGACCTGATGGGTATCCGTTGATTCATGTGCGGTATCTGGGTGAACCTAGAGCGTATACGGCTACTCAAGTCTTTGCGATGATGTTGTCGAATCTTAAAGAGATAGCACAGAAAAACCTGAATGCGGCTGTTGTTGATTGCTGCATTGGGATTCCGATTTATTTTACTGATCTTCAGAGGAGAGCTGTCTTGGATGCAGCTACTATTGCTGGTTTGCATCCGCTTCATTTGATTCATGAAACAACGGCAACTGCTTTGGCTTATGGAATTTATAAGACTGATCTTCCTGAGAATGATCAGCTGAATGTTGCTTTTGTTGATGTTGGTCATGCTAGTATGCAAGTTTGTATTGCTGGATTTAAAAAGGGGCAGTTGAAAGTGTTGTCTCATTCGTACGATAGGTCCCTGGGTGGTAGAGATTTTGATGAGGCTTTGTTCCATCATTTTGCTGCTAAGTTTAAGGAGGAGTACAAGATTGATGTTTATCAGAATGCCAGGGCTTCTCTGAGGTTGAGGACTGCATGTGAGAAGCTGAAGAAAGTTCTCAGTGCAAATCCTGAGGCACCTCTGAACATCGAATGCTTAATGGAAGAGAAGGATGTTAGGGGATATATCAAGCGTGATGACTTTGAGCAGCTATCTCTTCCAATATTGGAACGTGTGAAGGGGCCTTTGGAGAAGGCACTAGCAGAAGCTGGTCTTACAGTTGATAACATCCACATGGTTGAGGTAGTTGGTTCTGGTTCTCGTGTACCAGCAATTAACAAAATATTGACTGAGTTTTTCAAAAAGGAACCTAGGCGGACAATGAATGCTAGTGAGTGTGTTGCCAGGGGTGCTGCATTGCAGTGTGCTATTCTCAGTCCAACTTTTAAAGTCCGAGAGTTCCAGGTCAACGAAAGCTTTCCTTTCTCAATTTCTCTGTCATGGAAAGGTTCTGGTTCAGATGCACATGACAGTGCACCAGACAATAAACAAAGTACCCTTGTTTTTCCCAAAGGAAATTCCATTCCAAGTGTCAAGGTACTGACATTCTTCAGAACAGAAACCTTTTCTGTTGATGTACAATGTCATGATCAGAGCGATTTACAAACACCTACAAAGATCAGCACATATACTATTGGCCCTTTCAAAACTGAAAACGGTGAAAAGGCAAAGATTAAAGTGAAAGTTCGTTTGAGTCTTCATGGAATTGTAACTGTTGATTCGGCAACTCTCTTCGAAGAGGAAGAAATTGAAGTTCCAGTTACCAAAGAATCAGCAGAAGAAAATGCCAAGATGGAAACTGATGAAGCTCCCACTGATGCTGCTGCACCACCACCTACTAGCTCCAATGATAGCGATGTTAATATGCAAGATGCTAAGGCTGCTGCTGATACCAATGGAGCTGTGAATGGTGTGCCTGAGTCAGGAGACAAGCCTGTGCAAATGGATACTGATGCCAAGGTTGAGGCTCCAAAGAAAAAAGTGAAGAAAACAAACATTCCTATTACAGAGGTAGTCTATGGTGCAATGTCAACTGTGGATGTTCAGAAAGCTGTAGAGAAGGAGTTTGAAATGGCTTTGCAGGATCGAGTGATGGAGGATACAAAGGACAAGAAAAATGCAGTTGAGGCTTATGTTTATGACATGAGAAACAAGCTTAATGATAGATACCACGAGTTTGTCCAAGCTTCAGAAAGCAATGAATTTCTTGCCAAACTTCAGGAGGTGGAGGATTGGCTATATGAGGATGGTGAAGATGAGACCAAAGGTGTATACGTTGCTAAGCTAGAAGAACTCAAAAAGCAAGGGGATCCAATCGAGGAGCGCTACAAAGAACACACAGACAGAGATGCAGTAATTGACCAGCTTGTCTATTGTATCAATAGTTACAGAGAAGTTGCAATGTCTAATGATCCCAAATTTGATCACATTGACATCAATGAGAAACAGAAGGTCTTGAATGAATGTGGAGAAGCTGAGAACTGGCTTAGAGAGAAGAAGCAACAACAGAGTTTGCTTCCAAAATATGCTACCCCCGTCCTCTTGTCAGCTGATATAAGAAAAAAAGCTGAGGCTGTTGATAGGTCCTGCAAGCCGATTATGACAAAACCAAAACCGGCGAAGCCTGCTTCTCCAGCTACTCCAGAAACACCGGCAACCCCACCTCCTCAGGACGGCGAGCAGGAGCAGCAGCAGCAACCAGAACAGCAACCTCAAGAGGATGCTAATGCCAGTTCCAATGGGAATGCAGAGCAAAATGGTAATCAAGTCCCACCAGCCTCTGGTGAACCAATGGAGACTGACAAACCGGAGAACACCGGCTCAGCCTAA 2595 0.437 MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAIVCFGDKQRFIGTAGAATTMMNPKNSISQMKRLIGKKFADPEVQSDLKSLPFAVTEGPDGYPLIHVRYLGEPRAYTATQVFAMMLSNLKEIAQKNLNAAVVDCCIGIPIYFTDLQRRAVLDAATIAGLHPLHLIHETTATALAYGIYKTDLPENDQLNVAFVDVGHASMQVCIAGFKKGQLKVLSHSYDRSLGGRDFDEALFHHFAAKFKEEYKIDVYQNARASLRLRTACEKLKKVLSANPEAPLNIECLMEEKDVRGYIKRDDFEQLSLPILERVKGPLEKALAEAGLTVDNIHMVEVVGSGSRVPAINKILTEFFKKEPRRTMNASECVARGAALQCAILSPTFKVREFQVNESFPFSISLSWKGSGSDAHDSAPDNKQSTLVFPKGNSIPSVKVLTFFRTETFSVDVQCHDQSDLQTPTKISTYTIGPFKTENGEKAKIKVKVRLSLHGIVTVDSATLFEEEEIEVPVTKESAEENAKMETDEAPTDAAAPPPTSSNDSDVNMQDAKAAADTNGAVNGVPESGDKPVQMDTDAKVEAPKKKVKKTNIPITEVVYGAMSTVDVQKAVEKEFEMALQDRVMEDTKDKKNAVEAYVYDMRNKLNDRYHEFVQASESNEFLAKLQEVEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEHTDRDAVIDQLVYCINSYREVAMSNDPKFDHIDINEKQKVLNECGEAENWLREKKQQQSLLPKYATPVLLSADIRKKAEAVDRSCKPIMTKPKPAKPASPATPETPATPPPQDGEQEQQQQPEQQPQEDANASSNGNAEQNGNQVPPASGEPMETDKPENTGSA 864
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00167 864 MobiDBLite consensus disorder prediction 811 848 - -
Vifa5g00167 864 Pfam Hsp70 protein 3 699 IPR013126 GO:0005524|GO:0140662
Vifa5g00167 864 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 709 798 IPR029048 -
Vifa5g00167 864 Gene3D - 38 113 - -
Vifa5g00167 864 FunFam Heat shock 70 kDa protein 4 111 205 - -
Vifa5g00167 864 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Vifa5g00167 864 Gene3D - 5 374 - -
Vifa5g00167 864 FunFam Heat shock 70 kDa protein 14 387 596 - -
Vifa5g00167 864 PANTHER HSC70CB, ISOFORM G-RELATED 1 832 - -
Vifa5g00167 864 FunFam Heat shock 70 kDa protein 4 1 85 - -
Vifa5g00167 864 MobiDBLite consensus disorder prediction 779 864 - -
Vifa5g00167 864 FunFam Heat shock 70 kDa protein 4 230 313 - -
Vifa5g00167 864 CDD HSPA4_like_NDB 2 381 - -
Vifa5g00167 864 Gene3D Actin; Chain A, domain 4 230 313 - -
Vifa5g00167 864 FunFam Heat shock 70 kDa protein 4 38 113 - -
Vifa5g00167 864 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 600 698 IPR029048 -
Vifa5g00167 864 FunFam Heat shock 70 kDa protein 4 598 708 - -
Vifa5g00167 864 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 385 525 IPR029047 -
Vifa5g00167 864 PRINTS 70kDa heat shock protein signature 332 348 - -
Vifa5g00167 864 PRINTS 70kDa heat shock protein signature 363 383 - -
Vifa5g00167 864 PRINTS 70kDa heat shock protein signature 30 42 - -
Vifa5g00167 864 PRINTS 70kDa heat shock protein signature 140 160 - -
Vifa5g00167 864 PRINTS 70kDa heat shock protein signature 2 15 - -
Vifa5g00167 864 MobiDBLite consensus disorder prediction 507 523 - -
Vifa5g00167 864 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Vifa5g00167 864 Gene3D - 598 708 IPR029048 -
Vifa5g00167 864 Gene3D - 186 360 - -
Vifa5g00167 864 MobiDBLite consensus disorder prediction 507 578 - -
Vifa5g00167 864 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 631 IPR029047 -
Vifa5g00167 864 MobiDBLite consensus disorder prediction 793 810 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa5g00167 Vifa-Chr5 22174820 22178550 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00167 4 697 Calmodulin-binding Proteins AT3G12580 29.471 1.78e-86 287
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00167 K09489 - gmx:100778196 1377.07
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00167 5 22174820 22178550 Vifa5g00167 5 22174820 22178550 ECH
Vifa5g00167 5 22174820 22178550 Vifa2g02224 2 576299282 576307007 PCT