Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00165 ATGTCAACCTATGAATTTGCAGCTCGGGTGCCGCCGGAACCATCCGCCGCAGCTTCTTCAGCTACCAAACCATCTTTTGGGGCTAGAAACTCGCTTAGTGAATGGACTGAGAAAGAGACATTTGTTCTTCTTGATGCGTGGGGTGATCGGTTTCTTCAACATGGAAGGAAGAGTCTTCGATCTGATGAATGGCAACAAGTTGCAGAGAAGGTATCAGAAGTTTCAAAAGTTGATAGGACAGATACTCAGTGTAGAAATCGTCTGGATACATTGAAGAAAAAATACAAAAAGGACAAGATTAAGTTTTCAGAAATGGGTGGTGGAGATAAAAAATGGGTTTACTTCAAAAAGATGGATAAATTAATGTCTTCTCCACCGCAACAAGCCGGTTTCTCTTGTGGTTTGGACTCAAGAGAAAGTGTTTTTATGAAGCCTAGAGTTTTTGTTAATCATGCAAATGGGTTGGGTGACACGAGGGATAATCCCGCGAATACCGAATCCATTGGTGTAGAAGGTTTAGAAAGGCCTCGCGCAAAGAAAAGAAGGAAAAGTAGGGGCAGTGACGAGTCTTCTTCCTTCAAATTACTTGCTGATTCCATTCAGAATTTCGGTAAGATATATGAGAAAATTGAAAATAATAAAAGGCAGCAGATAATGGAACTGGAAAAGATGAGGATGGATTTCCTCACTGAATTGGAAACACAAAAGAGACAGATTTTTGAAAAATTGCAGAGTGAGATTTTAAAACTCGAGCAAAGAGATGGTTAG 768 0.4023 MSTYEFAARVPPEPSAAASSATKPSFGARNSLSEWTEKETFVLLDAWGDRFLQHGRKSLRSDEWQQVAEKVSEVSKVDRTDTQCRNRLDTLKKKYKKDKIKFSEMGGGDKKWVYFKKMDKLMSSPPQQAGFSCGLDSRESVFMKPRVFVNHANGLGDTRDNPANTESIGVEGLERPRAKKRRKSRGSDESSSFKLLADSIQNFGKIYEKIENNKRQQIMELEKMRMDFLTELETQKRQIFEKLQSEILKLEQRDG 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00165 255 Pfam Myb/SANT-like DNA-binding domain 34 121 IPR044822 -
Vifa5g00165 255 FunFam trihelix transcription factor ASIL2 35 97 - -
Vifa5g00165 255 Gene3D - 35 97 - -
Vifa5g00165 255 ProSiteProfiles Myb-like domain profile. 33 92 IPR001005 -
Vifa5g00165 255 MobiDBLite consensus disorder prediction 172 189 - -
Vifa5g00165 255 MobiDBLite consensus disorder prediction 1 29 - -
Vifa5g00165 255 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 21 252 IPR044823 -
Vifa5g00165 255 MobiDBLite consensus disorder prediction 152 191 - -
Vifa5g00165 255 Coils Coil 207 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00165 Vifa-Chr5 22059537 22060304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00165 174 255 Trihelix Transcription Factor Family AT3G14180 41.463 2.09e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa5g00165 Myb_DNA-bind_4 6.5e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00165 - - psat:127087507 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00165 5 22059537 22060304 Vifa5g00165 5 22059537 22060304 ECH