Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00164 ATGGATGACATTGAGAATGATGCAATTGCAAGGTATCCCCCTAACCCATATGCTGTTAGTCACCCTCATAATCAAGGCTATGGTTATCAGAAACATCCTTTTAGGAGTTCTCCTTATTCCGAACGAGTTGTAAATGAATCTGCTGAAGATTTTAATGGTGGTGATGAAGAAGATGAATACAGGTTAGGAGGGAAAGATGATGTTGTAGATGATGATGGGGAGGATGAGGTTGATCGAAATAGGAGCGTTCGAATTCCCGTGAATCATGTTGATGAAGATGATGACATGGATGGGAATGGCGATGAGAATGATGATAATGACCAACAACAAAGTGAGGAGTATGGTGATCTGAAACATCCTGTGAGGAATTCTCCGTATTCCCCGCCATTTGAAAATGAAGGTAACAATGATGGGGTTGAAGAAGATGAAGAACGGTCAGTGGGGGAAGATGTAGGTGACGGTGATGATGATGTTGATCAAAATAACAACTTTCAGCTTTCCCGAAATCATGGTGATGAAGAAGATAACAATGACGGGGATGGGGATAGGGATAGGGATGAAGAAGATAACAATGATGGGGATGAGGATCGAGATCGGGATAGGGATGAAAATGGTGATGACAACGATGGTGATAATGACAATAAGCAGAAAAGCTATGCCATCATGAATGAAGATGAATTTGAGTGGCACCCAAAAAAGCAAAAGCTCAAGAGTTTGATGTCAACCTATGAATTTGCAGCTCGGGTGCCGCCGGAACCATCCGCCGCAGCTTCTTCAGCTACCAAACCATCTTTTGGGGCTAGAAACTCGCTTAGTGAATGGACTGAGAAAGAGACATTTGTTCTTCTTGATGCGTGGGGTGATCGGTTTCTTCAACATGGAAGGAAGAGTCTTCGATCTGATGAATGGCAACAAGTTGCAGAGAAGGTATCAGAAGTTTCAAAAGTTGATAGGACAGATACTCAGTGTAGAAATCGTCTGGATACATTGAAGAAAAAATACAAAAAGGACAAGATTAAGTTTTCAGAAATGGGTGGTGGAGATAAAAAATGGGTTTACTTCAAAAAGATGGATAAATTAATGTCTTCTCCACCGCAACAAGCCGGTTTCTCTTGTGGTTTGGACTCAAGAGAAAGTGTTTTTATGAAGCCTAGAGTTTTTGTTAATCATGCAAATGGGTTGGGTGACACGAGGGATAATCCCGCGAATACCGAATCCATTGGTGTAGAAGGTTTAGAAAGGCCTCGCGCAAAGAAAAGAAGGAAAAGTAGGGGCAGTGACGAGTCTTCTTCCTTCAAATTACTTGCTGATTCCATTCAGAATTTCGGTAAGATATATGAGAAAATTGAAAATAATAAAAGGCAGCAGATAATGGAACTGGAAAAGATGAGGATGGATTTCCTCACTGAATTGGAAACACAAAAGAGACAGATTTTTGAAAAATTGCAGAGTGAGATTTTAAAACTCGAGCAAAGAGATGGTTAG 1485 0.4088 MDDIENDAIARYPPNPYAVSHPHNQGYGYQKHPFRSSPYSERVVNESAEDFNGGDEEDEYRLGGKDDVVDDDGEDEVDRNRSVRIPVNHVDEDDDMDGNGDENDDNDQQQSEEYGDLKHPVRNSPYSPPFENEGNNDGVEEDEERSVGEDVGDGDDDVDQNNNFQLSRNHGDEEDNNDGDGDRDRDEEDNNDGDEDRDRDRDENGDDNDGDNDNKQKSYAIMNEDEFEWHPKKQKLKSLMSTYEFAARVPPEPSAAASSATKPSFGARNSLSEWTEKETFVLLDAWGDRFLQHGRKSLRSDEWQQVAEKVSEVSKVDRTDTQCRNRLDTLKKKYKKDKIKFSEMGGGDKKWVYFKKMDKLMSSPPQQAGFSCGLDSRESVFMKPRVFVNHANGLGDTRDNPANTESIGVEGLERPRAKKRRKSRGSDESSSFKLLADSIQNFGKIYEKIENNKRQQIMELEKMRMDFLTELETQKRQIFEKLQSEILKLEQRDG 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00164 494 MobiDBLite consensus disorder prediction 135 157 - -
Vifa5g00164 494 MobiDBLite consensus disorder prediction 94 110 - -
Vifa5g00164 494 MobiDBLite consensus disorder prediction 1 226 - -
Vifa5g00164 494 MobiDBLite consensus disorder prediction 208 226 - -
Vifa5g00164 494 Pfam Myb/SANT-like DNA-binding domain 273 360 IPR044822 -
Vifa5g00164 494 FunFam trihelix transcription factor ASIL2 274 336 - -
Vifa5g00164 494 MobiDBLite consensus disorder prediction 391 430 - -
Vifa5g00164 494 Coils Coil 446 477 - -
Vifa5g00164 494 Gene3D - 274 336 - -
Vifa5g00164 494 MobiDBLite consensus disorder prediction 75 93 - -
Vifa5g00164 494 MobiDBLite consensus disorder prediction 177 207 - -
Vifa5g00164 494 ProSiteProfiles Myb-like domain profile. 272 331 IPR001005 -
Vifa5g00164 494 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 259 491 IPR044823 -
Vifa5g00164 494 MobiDBLite consensus disorder prediction 411 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00164 Vifa-Chr5 22058820 22060304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00164 413 494 Trihelix Transcription Factor Family AT3G14180 41.463 5.67e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vifa5g00164 Myb_DNA-bind_4 2.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00164 - - psat:127087507 713.761