Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00162 ATGGGTATGAATTGCAACAGAGTAGAACACTTTGAAGAATCCACCATGAAAATCCAAACTGAAATTCCAATTCATCAAGTTCGTTTACCACCACAACGAACTTCACTCAACAAACTCAAACAACGTCTCTCTGAAATCTTCTTCCCTGATGATCCTTTGCACCGTTTCAAAAACCAACCATCTTTCACCAAGTTTCTTCTCACTCTTCAATTCTTGTTCCCCATTTTCCAATGGGGCTCCAACTATAATCTCAAACTCCTCCGCTCCGATGTCATCTCCGGCCTCACCATTGCCAGCCTCTCCATTCCTCAGGGGATAAGTTATGCGAAGTTAGCAAACTTGCCGCCTATTATTGGATTATATTCAAGTTTTGTGCCACCATTGATATATGCTTTACTTGGAAGTTCAAGACATGTTGGTGTTGGACCAGTTTCAATTGCATCATTGGTTATGGGATCAATGTTGAGTGAAAGTGTTTCTTTCACTAAAGATCCTACTCTTTATCTTCAATTGGCTTTCACTGCAACTTTTGTTGCTGGGTTATTCCAAGCTTCACTTGGCATATTAAGGTTGGGTTTTGTAATTGATTTTCTATCAAAGGCTACATTGGTTGGTTTCATGGCTGGTGCTGCTATCATTGTTTCATTACAACAGTTGAAAGGGTTACTTGGAATTGTGCATTTTACTAACAAGATGCAAATTATTCCTGTTTTGCTCTCTGTTTACAACCAAAAGAATGAGTGGTCATGGCAAACCATTGTTATGGGATTTGGTTTCTTGGCTTTCCTTCTCACAACAAGACACATTAGTTTGAGGAAACCAAAACTCTTCTGGGCTTCAGCAGCTGCTCCTTTAACATCAGTTATTCTGTCAACCATTTTAGTCTTTCTTCTCAGAAATAAAACTCATCAAATTTCAGTGATTGGACACTTAACAAAGGGTGTTAATCCACCATCAGTAAACCTGTTATACTTCAATGGTCCTTACTTGGCTCTTGCTATCAAAACAGGCATTGTCACTGGGATTCTATCTCTCACTGAAGGAATTGCGGTAGGTAGAACATTTGCAGCACTTAAGAATTACCAAGTGGATGGAAACAAAGAAATGATGGCTATTGGTATAATGAACATAGCCGGTTCTTGTACTTCATGCTATGTCACAACAGGATCGTTTTCTCGAACGGCTGTTAACTACAATGCTGGAGCACAGACTGCGGTTTCTAATATAATCATGGCTTCAGCTGTTCTAGTGACCCTTTTGTTTCTCATGCCGCTCTTTTACTATACGCCAAACGTTGTCTTAGCGACCATCATCATCGCTGCGGTGATTGGTCTGATAGACTATCAAGCTGCACATAAACTGTGGAAGGTTGACAAACTTGATTTCTTGGCCTGCATGTGCTCCTTTTTCGGTGTTCTCTTCCTTTCTGTGCCTTTAGGCCTCAGTATCGCGGTTGCGATATCGGTCTTCAAGATCCTACTTCATGTCTCTAGACCAAACACTTTGGTTTTGGGGAACATACCAGGAACACAAATATTCCATAACATAAACCAATATAAAGAAGCTTTAAGAGTTCCTTCGTTTCTCATTTTGGCTGTTGAGTCTCCAATCTATTTCGCGAATTCAACTTACCTTCGCGAGAGGATACTAAGATGGGTTCGAGAAGAGGAAGATCGTGTAAAAGAAAATAACGGAAATGCATTGAAGTGCATAATTTTAGACATGACAGCTGTCACAGCAATAGACACGAGTGGACTCGAAACTTTAGGTGAACTTAGAAAGATGCTGGAAAAGAGATCACTTCAGTTTGTGTTGGTAAATCCTGTTGGAAACGTGATGGAAAAATTGCATATGTCAAAGATTTTGGATACCTTTGGATTTAAAGGACTATATCTCACAGTAGGAGAAGCTTTGGCTGATATTTCGACATCAGAGAAAGAGAAAGCTGAACCTTGA 1956 0.3998 MGMNCNRVEHFEESTMKIQTEIPIHQVRLPPQRTSLNKLKQRLSEIFFPDDPLHRFKNQPSFTKFLLTLQFLFPIFQWGSNYNLKLLRSDVISGLTIASLSIPQGISYAKLANLPPIIGLYSSFVPPLIYALLGSSRHVGVGPVSIASLVMGSMLSESVSFTKDPTLYLQLAFTATFVAGLFQASLGILRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTNKMQIIPVLLSVYNQKNEWSWQTIVMGFGFLAFLLTTRHISLRKPKLFWASAAAPLTSVILSTILVFLLRNKTHQISVIGHLTKGVNPPSVNLLYFNGPYLALAIKTGIVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGIMNIAGSCTSCYVTTGSFSRTAVNYNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPNVVLATIIIAAVIGLIDYQAAHKLWKVDKLDFLACMCSFFGVLFLSVPLGLSIAVAISVFKILLHVSRPNTLVLGNIPGTQIFHNINQYKEALRVPSFLILAVESPIYFANSTYLRERILRWVREEEDRVKENNGNALKCIILDMTAVTAIDTSGLETLGELRKMLEKRSLQFVLVNPVGNVMEKLHMSKILDTFGFKGLYLTVGEALADISTSEKEKAEP 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00162 651 ProSiteProfiles STAS domain profile. 518 641 IPR002645 -
Vifa5g00162 651 NCBIfam sulfate permease 74 637 IPR001902 GO:0016020|GO:0055085
Vifa5g00162 651 SUPERFAMILY SpoIIaa-like 524 640 IPR036513 -
Vifa5g00162 651 Pfam STAS domain 519 637 IPR002645 -
Vifa5g00162 651 ProSitePatterns SLC26A transporters signature. 116 137 IPR018045 GO:0008271|GO:0008272
Vifa5g00162 651 CDD STAS_SulP_like_sulfate_transporter 519 634 - -
Vifa5g00162 651 Pfam Sulfate permease family 87 467 IPR011547 GO:0016020
Vifa5g00162 651 FunFam Sulfate transporter 31 498 644 - -
Vifa5g00162 651 Gene3D STAS domain 498 644 IPR036513 -
Vifa5g00162 651 PANTHER SULFATE TRANSPORTER 36 642 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00162 Vifa-Chr5 22016296 22019920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00162 1 651 Inorganic Solute Cotransporters AT3G15990 75.498 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00162 K17471 - gmx:100812617 1083.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00162 5 22016296 22019920 Vifa5g00162 5 22016296 22019920 ECH
Vifa5g00162 5 22016296 22019920 Vifa2g05478 2 1630117385 1630123919 PCT