Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00153 ATGAGGAAGAGTGGTGTTTTGAAAGCTAGAGAGGTTCCGAGTCGATTTACTCGTGCTCGTGCTGCCGCTTTAAGTGCAACTGGAAATTTGCCACCGTTGAAGAAAGTAGCAGAAGAAAGTCAGAAGCATCTTGTTAGAGCCAATTCAAGAAGAGCAGTTTCAGATGATGCGTATCTTCCGCATAAGAAGAGGGCAATTCTTCATGATGTCACTAACGTTAGCTGTGAAAAAAGTAATAGGAGCTGTTTAAATCCAACTGAAACTCAGGCTAAGAAAAGAAAGCTGACTAAACCTGCTCGACCCGATGTTTCAAAGGAGATTCCATCAGTTGCTATGGAGCTGGAGCTACCACAATTTATTGCTTACTCAAAACCGCTGAAATTACCAGAAATGCGGCTTAGATCATCAGAAGATGTCACGTGTTCGGTTAAGTTGGAAGACAGTGAACCAATTAGGCTGACTGCCGATCATTGTGGTACAAATAACAATCTGCTTCACAGTCAGACGTCTCGAGTATCTTCTCATCCTTCGATTTCTCAAAAGAAAGCTTCACAAACTGTTGCGGCCAAGAAAGGTAACATTTCAGAACTTTTGGATGTGTCAAAGCATCCAGATGTTGCTGATATAGATGCTGATTTTGAAGATCCTTTACTTTGTAGCCTCTATGCTGCTGATATATATGACCACATGCGTGTCGCTGAGCTGTCGAGAAGGCCTTATCCCAACTTAATGGAAACAGTACAGCAAGATATCACTCCAAGCATGCGTGGTATACTGGTTGATTGGCTTGTAGAGGTTTCTGAGGGATACAAATTGCAAGCAAATACTCTTTACCTCACTGTATATCTCATTGATTGGTTTCTCTCAAAAAATTTCATTGAAAGACAGAAACTTCAGTTGCTTGGCATCACTTGCATGCTAATTGCCTCAAAGTACGAAGAAATTAACGCCCCCCATGTTGAAGACTTCTGCTTCATCACGGACAACACGTACACAAAAGGGCAGGTACTACAGATGGAGTCTGTAGTGTTGAAGTCCTCTGGATATCAACTATTTGCTCCTACTACAAAAACTTTCCTAAGGAGGTTCCTTCGAGCCGCTCAAGCTTCTTATAAGAGACCAAGCATTGAGTTGGAGTACTTGGCAAATTACCTGGCAGAAATAACACTGATGAGCTATGGTTTCTTAAATTTCCTTCCTTCAATGATTGCTGCATCCGCGGTTTTTCTCGCAAGATGGACATTGGATCAGTCAAACCACCCATGGAATCCAACTCTTGAACACTATGCCTCTTACAAAGCATCAGATTTGAAAGCCTCAGTTCTTGCATTACAAGATCTACAACTGAATAGCAATGACTGTCCTTTAACCTCGATCCGCACAAAGTACACACAAGACCGCTTCAAATGTGTAGCAACTTTGTCTTCACCGAAATTGCTCGAAACAATGTTTTGA 1455 0.4186 MRKSGVLKAREVPSRFTRARAAALSATGNLPPLKKVAEESQKHLVRANSRRAVSDDAYLPHKKRAILHDVTNVSCEKSNRSCLNPTETQAKKRKLTKPARPDVSKEIPSVAMELELPQFIAYSKPLKLPEMRLRSSEDVTCSVKLEDSEPIRLTADHCGTNNNLLHSQTSRVSSHPSISQKKASQTVAAKKGNISELLDVSKHPDVADIDADFEDPLLCSLYAADIYDHMRVAELSRRPYPNLMETVQQDITPSMRGILVDWLVEVSEGYKLQANTLYLTVYLIDWFLSKNFIERQKLQLLGITCMLIASKYEEINAPHVEDFCFITDNTYTKGQVLQMESVVLKSSGYQLFAPTTKTFLRRFLRAAQASYKRPSIELEYLANYLAEITLMSYGFLNFLPSMIAASAVFLARWTLDQSNHPWNPTLEHYASYKASDLKASVLALQDLQLNSNDCPLTSIRTKYTQDRFKCVATLSSPKLLETMF 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00153 484 Pfam Cyclin, C-terminal domain 354 476 IPR004367 -
Vifa5g00153 484 SMART Cyclin_C_2 354 477 IPR004367 -
Vifa5g00153 484 FunFam Mitotic cyclin 6 239 339 - -
Vifa5g00153 484 Pfam Cyclin, N-terminal domain 225 346 IPR006671 -
Vifa5g00153 484 CDD CYCLIN_AtCycA-like_rpt2 354 468 - -
Vifa5g00153 484 Gene3D - 225 473 - -
Vifa5g00153 484 SUPERFAMILY Cyclin-like 354 479 IPR036915 -
Vifa5g00153 484 PANTHER CYCLINS 173 445 IPR039361 -
Vifa5g00153 484 SUPERFAMILY Cyclin-like 214 350 IPR036915 -
Vifa5g00153 484 PIRSF Cyclin_A_B_D_E 19 483 IPR046965 GO:0016538|GO:0044772
Vifa5g00153 484 SMART cyclin_7 261 345 IPR013763 -
Vifa5g00153 484 SMART cyclin_7 358 446 IPR013763 -
Vifa5g00153 484 Gene3D - 239 352 - -
Vifa5g00153 484 FunFam Cyclin A1 341 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00153 Vifa-Chr5 19314194 19316985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00153 1 484 Core Cell Cycle Gene Families AT1G80370 51.120 1.24e-157 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00153 K06627 - gmx:100789757 606.675