Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00151 ATGAATATTCAGGAGGAGACTCTGCTCACTCTTGCTCTCCCCAATTCCACCAAATCAACTCTACCTTCAGCTGCAGCCACAAAACGTGCCTTCTCTACTACACTTGATCTTCATCTTGGCACCAAACATGTCGTTGGATGGCCACCGGTGAGAGGAAACAGAAAGAACATTTCCATGAAAGCTTGCAAGTACGTCAAAGTTGCGGTGGATGGAGCTCCATATCTAAGAAAAGTCAATCTTGAAATCTATGACGGTTATGACCATCTTCTGAGGGTAGTGGATGTCATGTTTGGTAGTACTAATTTGATGAATAAGAAGAAATACATGGTTACCTATGAGGACAAAGATGGTGACTGGATGTTGCTTGGAGATGTACCCTGGAAGATGTTTGTTGAATCATGCAAGAGAATAAGGCTTATGATTAGCATGGAGGATACTACTAGTTCCAGTTCCAGATGTACGGGTTCTAGTGAGAAGAACTAG 483 0.4265 MNIQEETLLTLALPNSTKSTLPSAAATKRAFSTTLDLHLGTKHVVGWPPVRGNRKNISMKACKYVKVAVDGAPYLRKVNLEIYDGYDHLLRVVDVMFGSTNLMNKKKYMVTYEDKDGDWMLLGDVPWKMFVESCKRIRLMISMEDTTSSSSRCTGSSEKN 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00151 160 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 144 IPR003311 GO:0005634|GO:0006355
Vifa5g00151 160 Gene3D - 57 154 - -
Vifa5g00151 160 ProSiteProfiles PB1 domain profile. 62 146 IPR000270 GO:0005515
Vifa5g00151 160 Pfam AUX/IAA family 100 144 IPR033389 -
Vifa5g00151 160 Pfam AUX/IAA family 38 98 IPR033389 -
Vifa5g00151 160 SUPERFAMILY CAD & PB1 domains 53 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00151 Vifa-Chr5 19146897 19147468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00151 49 137 B3 DNA Binding Superfamily AT4G23980 30.851 8.55e-10 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vifa5g00151 AUX_IAA 1.3e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00151 K14484 - gmx:100500488 168.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g00151 5 19146897 19147468 Vifa5g00151 5 19146897 19147468 ECH