Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g00141 ATGGAGAGCTTGAGAAAACCTTTCAGAGGGATTGTGAATGATTGTAAGGGAAGAGCATTGCACTACAAAGATGATTGGCTTTCTGGTTTCACTTCAGGAATTGGGATATTGGCACCAACTACATATATTTTCTTTGCTTCTGCTCTACCTGTTATTGCTTTCGGCGCGCAGCTCAGTAGAGACACAGATGGAAGCTTGAGTGTTGTAGAGACATTGGCTTCTACAGCAATTTGTGGAATCATACACTCCATTTTTGGTGGACAACCTCTACTAGTTCTAGGAGTTGCAGAACCCACTATTCTTATGTATACATATTTGTACAATTATGCCAAAAATACGGAGGGCTTGGGACGAGAACTCTATTTGGCTTGGGTAGGATGGGTTTGTGTATGGAGTGCTCTACTGCTGTTTCTTTTAGCAATATTCAATGCTGGCAATATCATCAATAGATTTACAAGGATTGCTGGTGAGGTTTTTGGCATGTTGATTACAGTCTTATTCATTCAAGAGGCTATCAAGGGAATGGTAACTGAGTTTCAAGTTCCTAAAGAAGGGAATCCAAAATTGGACAATTTTCAATTTCATTGGTTGTATGCAAATGGATTGCTTGGTGTTATATTCACTTTTGGCCTTCTCTATACTTCTTTAAAAAGCAGAAGAGCAAGGTCGTGGTTATACGGAACAGAAACGTTAAGGGGTTTCATTGCAGACTATGGAGTTCCTTTCATGGTAGTGGTGTGGACAGCTTTATCATTCGTAGTAGTATCGAGTAAAGTACCTTCTGGTGTTCCAAGAAGACTCGTTGCACCTTTGGCTTGGGAATCTGCGTCGTTACATCACTGGACAGTAATCAAAGATATGGGCAAGGTTTCTCCAACACACATTTTTCAAGCTTTTATTCCTGCCATAATGATAGCAGGGCTTTACTTCTTTGACCATAGTGTTGCATCCCAATTGGCACAACAAAAGGAATTCAATCTCAGGAAACCTTCTGCATATCACTATGACATATTGTTGCTAGGATTCATGACTTTGCTTTGTGGACTAATCGGCTTGCCTCCTTCAAATGGAGTTCTGCCTCAATCCCCTATGCACACTAAGAGTCTGTCTGTTCTCAAGAAACAGTTGATCAGAAGAAAGATGGTTAAAAGTGCCAAGGAAAGCATAAGGCAGGAAGCTAGCAACTCTGAAATATATGGGAAGATGCAAGCAGTGTTTATCGAAATGGATAATAATCCTAATAAACAGTCAGTGGTAAAAGAACTAGAGGACTTGAAAGAGTTTGTCCTAAATGGCGAAGATAAAGGAGAGAACAATAAGAGCACTTTTGATCCTGAGAAACACATTGATACATATTTGCCTGTAAGAGTAAAGGAGCAAAGAGTGAGCAACCTTTTACAGTCACTCTTTGTAGGAGCAGCAGTGTTTGCTATACCTGCCATAAAATTGATACCAACTTCAGTTTTGTGGGGATACTTTGCTTACATGGCTATTGATAGTCTTCCAGGGAATCAATTCTGGGAAAGAATACTCCTTCTTTTTGTAAGACCTAGTAGGTGGTACAAATTATTGGAAGGTGATCATGCTTCCTTTGTTGAGTCGGTACCTTTCAAAAACATAGTCTTGTTTACACTCATCCAATGTTTGTATTTCTTAATTTGCTTTGGAGTGACATGGATTCCAATTGCTGGAATGTTGTTCCCTTTGCCATTTTTTTTGTTAATCATATTGAGACAACATATACTCCCCAAGTTCTTCAGTCCAAACCATCTTATGGAACTAGATGCAGCTGAATATGAAGAAATTCCTGGTGCTCCAAAACTAAGTCTCAGTTTATCCTTAAAGGAGGTTGAATCACCTAAAGATGGATCAACAGACATAGATAGTGCTGAAATATTAGACGAGTTAACCACTAACAGAGGGGAGTTGAAGGTCAAAACTACTAGCTTTATTGATGAAAGAAGTCAACAGATTCATCCTCATGAAATTGATTCACACTCACATGTTGAGGAAAGGTGA 2019 0.3928 MESLRKPFRGIVNDCKGRALHYKDDWLSGFTSGIGILAPTTYIFFASALPVIAFGAQLSRDTDGSLSVVETLASTAICGIIHSIFGGQPLLVLGVAEPTILMYTYLYNYAKNTEGLGRELYLAWVGWVCVWSALLLFLLAIFNAGNIINRFTRIAGEVFGMLITVLFIQEAIKGMVTEFQVPKEGNPKLDNFQFHWLYANGLLGVIFTFGLLYTSLKSRRARSWLYGTETLRGFIADYGVPFMVVVWTALSFVVVSSKVPSGVPRRLVAPLAWESASLHHWTVIKDMGKVSPTHIFQAFIPAIMIAGLYFFDHSVASQLAQQKEFNLRKPSAYHYDILLLGFMTLLCGLIGLPPSNGVLPQSPMHTKSLSVLKKQLIRRKMVKSAKESIRQEASNSEIYGKMQAVFIEMDNNPNKQSVVKELEDLKEFVLNGEDKGENNKSTFDPEKHIDTYLPVRVKEQRVSNLLQSLFVGAAVFAIPAIKLIPTSVLWGYFAYMAIDSLPGNQFWERILLLFVRPSRWYKLLEGDHASFVESVPFKNIVLFTLIQCLYFLICFGVTWIPIAGMLFPLPFFLLIILRQHILPKFFSPNHLMELDAAEYEEIPGAPKLSLSLSLKEVESPKDGSTDIDSAEILDELTTNRGELKVKTTSFIDERSQQIHPHEIDSHSHVEER 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g00141 672 Pfam HCO3- transporter family 455 546 IPR011531 GO:0006820|GO:0016020
Vifa5g00141 672 Pfam HCO3- transporter family 7 180 IPR011531 GO:0006820|GO:0016020
Vifa5g00141 672 Pfam HCO3- transporter family 201 375 IPR011531 GO:0006820|GO:0016020
Vifa5g00141 672 PANTHER ANION EXCHANGE PROTEIN 5 603 IPR003020 GO:0005452|GO:0006820|GO:0016020
Vifa5g00141 672 Gene3D Helical hairpin bin 18 60 - -
Vifa5g00141 672 MobiDBLite consensus disorder prediction 653 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g00141 Vifa-Chr5 17066686 17070372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g00141 1 663 Antiporters AT1G74810 68.713 0.0 953
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g00141 K24194 - gmx:100811184 1095.88